Analysis of interatomic Contacts of Structural Units in PDB entry:
8XGR

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8XGR entry

There are 5 chains in PDB entry 8XGR (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
G	ILE 9	PHE 434
B	LEU 4	ASN 340
N	GLN 1	SER 128
R	SER 86	CYS 403
L	CYS 1	TRP 21

There are 31 helices in PDB entry 8XGR. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	G	12	22	Right-handed alpha
Helix 2	AA2	G	29	44	Right-handed alpha
Helix 3	AA3	G	45	48	Right-handed 310
Helix 4	AA4	G	88	112	Right-handed alpha
Helix 5	AA5	G	125	132	Right-handed alpha
Helix 6	AA6	G	291	296	Right-handed 310
Helix 7	AA7	G	323	335	Right-handed alpha
Helix 8	AA8	G	350	359	Right-handed alpha
Helix 9	AA9	G	362	366	Right-handed 310
Helix 10	AB1	G	368	372	Right-handed 310
Helix 11	AB2	G	376	390	Right-handed alpha
Helix 12	AB3	G	410	432	Right-handed alpha
Helix 13	AB4	B	5	26	Right-handed alpha
Helix 14	AB5	B	29	34	Right-handed alpha
Helix 15	AB6	R	97	129	Right-handed alpha
Helix 16	AB7	R	130	133	Right-handed 310
Helix 17	AB8	R	134	153	Right-handed alpha
Helix 18	AB9	R	154	164	Right-handed alpha
Helix 19	AC1	R	172	175	Right-handed 310
Helix 20	AC2	R	176	205	Right-handed alpha
Helix 21	AC3	R	205	210	Right-handed alpha
Helix 22	AC4	R	215	233	Right-handed alpha
Helix 23	AC5	R	233	239	Right-handed alpha
Helix 24	AC6	R	263	271	Right-handed alpha
Helix 25	AC7	R	272	281	Right-handed alpha
Helix 26	AC8	R	282	301	Right-handed alpha
Helix 27	AC9	R	316	350	Right-handed alpha
Helix 28	AD1	R	357	380	Right-handed alpha
Helix 29	AD2	R	381	388	Right-handed alpha
Helix 30	AD3	R	390	402	Right-handed alpha
Helix 31	AD4	L	8	18	Right-handed alpha

There are 15 sheets in PDB entry 8XGR. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	265	266	first strand
Strand 2	G	274	280	anti-parallel
Strand 3	G	269	271	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	265	266	first strand
Strand 2	G	274	280	anti-parallel
Strand 3	G	113	118	parallel
Strand 4	G	300	303	parallel
Strand 5	G	343	346	parallel
Strand 6	G	400	401	parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	49	51	first strand
Strand 2	B	336	339	anti-parallel
Strand 3	B	327	330	anti-parallel
Strand 4	B	317	320	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	58	62	first strand
Strand 2	B	71	74	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	81	82	first strand
Strand 2	B	89	91	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	104	105	first strand
Strand 2	B	112	115	anti-parallel
Strand 3	B	121	124	anti-parallel
Strand 4	B	135	139	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	146	153	first strand
Strand 2	B	156	161	anti-parallel
Strand 3	B	168	170	anti-parallel
Strand 4	B	175	178	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	191	192	first strand
Strand 2	B	198	201	anti-parallel
Strand 3	B	208	212	anti-parallel
Strand 4	B	217	222	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	233	234	first strand
Strand 2	B	240	242	anti-parallel
Strand 3	B	250	254	anti-parallel
Strand 4	B	259	264	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	273	277	first strand
Strand 2	B	284	289	anti-parallel
Strand 3	B	295	298	anti-parallel
Strand 4	B	304	307	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	3	7	first strand
Strand 2	N	17	25	anti-parallel
Strand 3	N	78	84	anti-parallel
Strand 4	N	68	73	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	11	12	first strand
Strand 2	N	125	126	parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	36	39	first strand
Strand 2	N	45	49	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	240	242	first strand
Strand 2	R	255	257	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	245	247	first strand
Strand 2	R	250	252	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8XGR

Analysis of interatomic Contacts of Structural Units in PDB entry:
8XGR