Analysis of interatomic Contacts of Structural Units in PDB entry:
8XGS

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8XGS entry

There are 6 chains in PDB entry 8XGS (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 39	VAL 337
B	ARG 8	ASN 340
C	ILE 9	PHE 62
D	ASP 18	LEU 264
E	THR 4	VAL 353
F	TRP 1	PHE 8

There are 29 helices in PDB entry 8XGS. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	40	70	Right-handed alpha
Helix 2	AA2	A	75	83	Right-handed alpha
Helix 3	AA3	A	85	102	Right-handed alpha
Helix 4	AA4	A	111	146	Right-handed alpha
Helix 5	AA5	A	155	175	Right-handed alpha
Helix 6	AA6	A	176	180	Right-handed 310
Helix 7	AA7	A	197	213	Right-handed alpha
Helix 8	AA8	A	213	223	Right-handed alpha
Helix 9	AA9	A	225	236	Right-handed alpha
Helix 10	AB1	A	245	287	Right-handed alpha
Helix 11	AB2	A	298	325	Right-handed alpha
Helix 12	AB3	A	327	336	Right-handed alpha
Helix 13	AB4	B	9	25	Right-handed alpha
Helix 14	AB5	B	29	34	Right-handed alpha
Helix 15	AB6	C	10	23	Right-handed alpha
Helix 16	AB7	C	29	44	Right-handed alpha
Helix 17	AB8	D	45	49	Right-handed 310
Helix 18	AB9	D	78	82	Right-handed 310
Helix 19	AC1	D	104	108	Right-handed 310
Helix 20	AC2	E	8	30	Right-handed alpha
Helix 21	AC3	E	45	57	Right-handed alpha
Helix 22	AC4	E	210	215	Right-handed 310
Helix 23	AC5	E	227	229	Right-handed 310
Helix 24	AC6	E	240	247	Right-handed alpha
Helix 25	AC7	E	249	254	Right-handed alpha
Helix 26	AC8	E	255	261	Right-handed 310
Helix 27	AC9	E	269	275	Right-handed alpha
Helix 28	AD1	E	297	309	Right-handed alpha
Helix 29	AD2	E	329	350	Right-handed alpha

There are 14 sheets in PDB entry 8XGS. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	46	51	first strand
Strand 2	B	336	340	anti-parallel
Strand 3	B	327	331	anti-parallel
Strand 4	B	315	320	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	61	63	first strand
Strand 2	B	69	74	anti-parallel
Strand 3	B	78	83	anti-parallel
Strand 4	B	88	94	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	103	105	first strand
Strand 2	B	111	114	anti-parallel
Strand 3	B	121	125	anti-parallel
Strand 4	B	134	139	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	146	153	first strand
Strand 2	B	156	161	anti-parallel
Strand 3	B	166	168	anti-parallel
Strand 4	B	177	180	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	187	192	first strand
Strand 2	B	199	203	anti-parallel
Strand 3	B	207	210	anti-parallel
Strand 4	B	220	223	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	229	234	first strand
Strand 2	B	240	245	anti-parallel
Strand 3	B	250	254	anti-parallel
Strand 4	B	260	264	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	273	278	first strand
Strand 2	B	285	289	anti-parallel
Strand 3	B	296	297	anti-parallel
Strand 4	B	304	306	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	23	24	first strand
Strand 2	D	34	40	anti-parallel
Strand 3	D	95	101	anti-parallel
Strand 4	D	85	90	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	27	29	first strand
Strand 2	D	133	136	parallel
Strand 3	D	109	110	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	67	68	first strand
Strand 2	D	50	52	anti-parallel
Strand 3	D	115	116	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	55	56	first strand
Strand 2	D	62	63	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	157	158	first strand
Strand 2	D	172	178	anti-parallel
Strand 3	D	228	233	anti-parallel
Strand 4	D	220	225	anti-parallel

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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	163	164	first strand
Strand 2	D	260	262	parallel
Strand 3	D	242	248	anti-parallel
Strand 4	D	191	196	anti-parallel
Strand 5	D	203	207	anti-parallel
Strand 6	D	211	212	anti-parallel

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There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	185	189	first strand
Strand 2	E	194	198	anti-parallel
Strand 3	E	33	38	parallel
Strand 4	E	219	225	parallel
Strand 5	E	263	268	parallel
Strand 6	E	318	319	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8XGS

Analysis of interatomic Contacts of Structural Units in PDB entry:
8XGS