Analysis of interatomic Contacts of Structural Units in PDB entry:
8XGU

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8XGU entry

There are 8 chains in PDB entry 8XGU (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	VAL 40	ARG 336
C	THR 4	PHE 354
B	LEU 4	ASN 340
G	SER 8	GLU 63
S	ASP 1	LEU 247
E	ASN 4	PHE 6
E	LEU 8	LEU 8
E	TRP 10	TRP 10

There are 25 helices in PDB entry 8XGU. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	40	45	Right-handed alpha
Helix 2	AA2	A	45	70	Right-handed alpha
Helix 3	AA3	A	75	101	Right-handed alpha
Helix 4	AA4	A	111	146	Right-handed alpha
Helix 5	AA5	A	155	175	Right-handed alpha
Helix 6	AA6	A	176	179	Right-handed 310
Helix 7	AA7	A	197	234	Right-handed alpha
Helix 8	AA8	A	246	276	Right-handed alpha
Helix 9	AA9	A	277	289	Right-handed alpha
Helix 10	AB1	A	298	325	Right-handed alpha
Helix 11	AB2	A	327	335	Right-handed alpha
Helix 12	AB3	C	6	31	Right-handed alpha
Helix 13	AB4	C	47	52	Right-handed alpha
Helix 14	AB5	C	207	216	Right-handed 310
Helix 15	AB6	C	242	255	Right-handed alpha
Helix 16	AB7	C	270	279	Right-handed alpha
Helix 17	AB8	C	282	286	Right-handed 310
Helix 18	AB9	C	295	309	Right-handed alpha
Helix 19	AC1	C	329	351	Right-handed alpha
Helix 20	AC2	B	5	26	Right-handed alpha
Helix 21	AC3	B	29	34	Right-handed alpha
Helix 22	AC4	G	9	23	Right-handed alpha
Helix 23	AC5	G	29	44	Right-handed alpha
Helix 24	AC6	S	28	32	Right-handed 310
Helix 25	AC7	S	87	91	Right-handed 310

There are 17 sheets in PDB entry 8XGU. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	185	191	first strand
Strand 2	C	194	200	anti-parallel
Strand 3	C	34	38	parallel
Strand 4	C	220	226	parallel
Strand 5	C	263	269	parallel
Strand 6	C	319	323	parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	46	51	first strand
Strand 2	B	336	340	anti-parallel
Strand 3	B	327	331	anti-parallel
Strand 4	B	315	320	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	58	63	first strand
Strand 2	B	69	74	anti-parallel
Strand 3	B	78	83	anti-parallel
Strand 4	B	88	94	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	100	105	first strand
Strand 2	B	111	116	anti-parallel
Strand 3	B	120	125	anti-parallel
Strand 4	B	134	140	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	146	153	first strand
Strand 2	B	156	161	anti-parallel
Strand 3	B	165	169	anti-parallel
Strand 4	B	176	181	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	191	192	first strand
Strand 2	B	198	202	anti-parallel
Strand 3	B	207	212	anti-parallel
Strand 4	B	220	223	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	229	234	first strand
Strand 2	B	240	245	anti-parallel
Strand 3	B	250	254	anti-parallel
Strand 4	B	259	264	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	273	278	first strand
Strand 2	B	284	289	anti-parallel
Strand 3	B	294	298	anti-parallel
Strand 4	B	304	308	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	6	7	first strand
Strand 2	S	17	23	anti-parallel
Strand 3	S	78	84	anti-parallel
Strand 4	S	69	73	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	10	12	first strand
Strand 2	S	115	119	parallel
Strand 3	S	92	94	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	50	51	first strand
Strand 2	S	33	35	anti-parallel
Strand 3	S	98	99	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	38	39	first strand
Strand 2	S	45	46	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	140	141	first strand
Strand 2	S	155	161	anti-parallel
Strand 3	S	211	216	anti-parallel
Strand 4	S	203	207	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	147	148	first strand
Strand 2	S	245	246	parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	174	175	first strand
Strand 2	S	230	231	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	185	186	first strand
Strand 2	S	178	179	anti-parallel
Strand 3	S	226	227	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	189	190	first strand
Strand 2	S	194	195	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8XGU

Analysis of interatomic Contacts of Structural Units in PDB entry:
8XGU