Analysis of interatomic Contacts of Structural Units in PDB entry:
8XHO


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8XHO entry

There are 2 chains in PDB entry 8XHO (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 50THR 311
B
 SER 50THR 311
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 20 helices in PDB entry 8XHO. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
60 65Right-handed alpha
Helix 2
AA2
A
113 118Right-handed 310
Helix 3
AA3
A
119 126Right-handed alpha
Helix 4
AA4
A
142 160Right-handed alpha
Helix 5
AA5
A
163 165Right-handed 310
Helix 6
AA6
A
178 191Right-handed alpha
Helix 7
AA7
A
232 240Right-handed alpha
Helix 8
AA8
A
257 261Right-handed 310
Helix 9
AA9
A
263 279Right-handed alpha
Helix 10
AB1
A
281 288Right-handed 310
Helix 11
AB2
B
60 65Right-handed alpha
Helix 12
AB3
B
113 117Right-handed 310
Helix 13
AB4
B
118 126Right-handed alpha
Helix 14
AB5
B
142 160Right-handed alpha
Helix 15
AB6
B
163 165Right-handed 310
Helix 16
AB7
B
178 191Right-handed alpha
Helix 17
AB8
B
232 240Right-handed alpha
Helix 18
AB9
B
257 261Right-handed 310
Helix 19
AC1
B
263 279Right-handed alpha
Helix 20
AC2
B
281 288Right-handed 310
Back to top of page

There are 4 sheets in PDB entry 8XHO. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
73 78first strand
Strand 2
A
88 93anti-parallel
Strand 3
A
130 134anti-parallel
Strand 4
A
101 107parallel
Strand 5
A
167 177parallel
Strand 6
A
196 200parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
216 221first strand
Strand 2
A
246 251parallel
Strand 3
A
300 304anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
73 78first strand
Strand 2
B
88 93anti-parallel
Strand 3
B
130 134anti-parallel
Strand 4
B
101 107parallel
Strand 5
B
167 177parallel
Strand 6
B
196 200parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
216 221first strand
Strand 2
B
246 251parallel
Strand 3
B
300 304anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il