Analysis of interatomic Contacts of Structural Units in PDB entry:
8XI3

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8XI3 entry

Note, this PDB entry contains modified residue(s) PHOSPHOSERINE (SEP) . This residue is treated as heterogroup (ligand) both in the PDB entry and in LPC/CSU analysis.

There are 7 chains in PDB entry 8XI3 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
F	VAL 2	ASP 236
D	MET 1	SER 235
A	ASP 97	ASN 1059
B	PHE 137	LEU 138
B	GLU 140	ASN 208
B	LEU 210	TYR 581
C	SER 26	GLU 114

There are 70 helices in PDB entry 8XI3. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	F	2	18	Right-handed alpha
Helix 2	AA2	F	19	34	Right-handed alpha
Helix 3	AA3	F	38	71	Right-handed alpha
Helix 4	AA4	F	77	112	Right-handed alpha
Helix 5	AA5	F	117	136	Right-handed alpha
Helix 6	AA6	F	140	165	Right-handed alpha
Helix 7	AA7	F	169	186	Right-handed alpha
Helix 8	AA8	F	191	207	Right-handed alpha
Helix 9	AA9	F	208	212	Right-handed 310
Helix 10	AB1	F	215	236	Right-handed alpha
Helix 11	AB2	D	2	17	Right-handed alpha
Helix 12	AB3	D	19	32	Right-handed alpha
Helix 13	AB4	D	38	74	Right-handed alpha
Helix 14	AB5	D	75	107	Right-handed alpha
Helix 15	AB6	D	117	137	Right-handed alpha
Helix 16	AB7	D	140	163	Right-handed alpha
Helix 17	AB8	D	169	186	Right-handed alpha
Helix 18	AB9	D	189	207	Right-handed alpha
Helix 19	AC1	D	215	226	Right-handed alpha
Helix 20	AC2	D	227	235	Right-handed alpha
Helix 21	AC3	A	98	109	Right-handed alpha
Helix 22	AC4	A	119	128	Right-handed alpha
Helix 23	AC5	A	151	163	Right-handed alpha
Helix 24	AC6	A	189	198	Right-handed alpha
Helix 25	AC7	A	203	211	Right-handed alpha
Helix 26	AC8	A	245	255	Right-handed alpha
Helix 27	AC9	A	272	277	Right-handed alpha
Helix 28	AD1	A	293	303	Right-handed alpha
Helix 29	AD2	A	310	319	Right-handed alpha
Helix 30	AD3	A	320	327	Right-handed alpha
Helix 31	AD4	A	329	346	Right-handed alpha
Helix 32	AD5	A	358	368	Right-handed alpha
Helix 33	AD6	A	382	400	Right-handed alpha
Helix 34	AD7	A	416	424	Right-handed alpha
Helix 35	AD8	A	444	458	Right-handed alpha
Helix 36	AD9	A	463	468	Right-handed 310
Helix 37	AE1	A	471	476	Right-handed alpha
Helix 38	AE2	A	488	498	Right-handed alpha
Helix 39	AE3	A	503	512	Right-handed alpha
Helix 40	AE4	A	518	532	Right-handed alpha
Helix 41	AE5	A	538	552	Right-handed alpha
Helix 42	AE6	A	555	562	Right-handed alpha
Helix 43	AE7	A	574	586	Right-handed alpha
Helix 44	AE8	A	623	639	Right-handed alpha
Helix 45	AE9	A	653	665	Right-handed alpha
Helix 46	AF1	A	681	683	Right-handed 310
Helix 47	AF2	A	684	693	Right-handed alpha
Helix 48	AF3	A	709	722	Right-handed alpha
Helix 49	AF4	A	738	751	Right-handed alpha
Helix 50	AF5	A	766	779	Right-handed alpha
Helix 51	AF6	A	795	807	Right-handed alpha
Helix 52	AF7	A	823	836	Right-handed alpha
Helix 53	AF8	A	852	865	Right-handed alpha
Helix 54	AF9	A	880	892	Right-handed alpha
Helix 55	AG1	A	909	911	Right-handed 310
Helix 56	AG2	A	912	923	Right-handed alpha
Helix 57	AG3	A	936	949	Right-handed alpha
Helix 58	AG4	A	969	979	Right-handed alpha
Helix 59	AG5	A	994	1006	Right-handed alpha
Helix 60	AG6	A	1018	1022	Right-handed 310
Helix 61	AG7	A	1023	1037	Right-handed alpha
Helix 62	AG8	A	1045	1049	Right-handed 310
Helix 63	AG9	B	157	176	Right-handed alpha
Helix 64	AH1	B	254	258	Right-handed 310
Helix 65	AH2	B	272	278	Right-handed alpha
Helix 66	AH3	B	338	341	Right-handed 310
Helix 67	AH4	C	37	41	Right-handed 310
Helix 68	AH5	C	50	59	Right-handed alpha
Helix 69	AH6	C	62	73	Right-handed alpha
Helix 70	AH7	C	94	114	Right-handed alpha

There are 11 sheets in PDB entry 8XI3. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	176	178	first strand
Strand 2	A	216	220	parallel
Strand 3	A	263	267	parallel
Strand 4	A	140	143	parallel
Strand 5	A	283	289	parallel
Strand 6	C	28	32	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	404	405	first strand
Strand 2	A	440	442	anti-parallel
Strand 3	A	429	431	anti-parallel

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There are 17 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	567	572	first strand
Strand 2	A	593	598	parallel
Strand 3	A	644	646	parallel
Strand 4	A	673	675	parallel
Strand 5	A	700	702	parallel
Strand 6	A	729	731	parallel
Strand 7	A	757	759	parallel
Strand 8	A	786	788	parallel
Strand 9	A	814	816	parallel
Strand 10	A	843	845	parallel
Strand 11	A	871	873	parallel
Strand 12	A	900	902	parallel
Strand 13	A	928	930	parallel
Strand 14	A	957	959	parallel
Strand 15	A	985	987	parallel
Strand 16	A	1014	1016	parallel
Strand 17	A	1041	1042	parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	327	328	first strand
Strand 2	B	283	291	parallel
Strand 3	B	573	580	anti-parallel
Strand 4	B	565	569	anti-parallel
Strand 5	B	556	559	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	296	300	first strand
Strand 2	B	307	312	anti-parallel
Strand 3	B	315	320	anti-parallel
Strand 4	B	333	336	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	346	351	first strand
Strand 2	B	357	362	anti-parallel
Strand 3	B	369	372	anti-parallel
Strand 4	B	379	382	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	394	397	first strand
Strand 2	B	401	405	anti-parallel
Strand 3	B	411	415	anti-parallel
Strand 4	B	421	425	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	434	437	first strand
Strand 2	B	441	445	anti-parallel
Strand 3	B	451	455	anti-parallel
Strand 4	B	460	461	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	471	476	first strand
Strand 2	B	482	487	anti-parallel
Strand 3	B	491	496	anti-parallel
Strand 4	B	504	508	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	513	518	first strand
Strand 2	B	524	529	anti-parallel
Strand 3	B	533	538	anti-parallel
Strand 4	B	544	549	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	45	49	first strand
Strand 2	C	87	92	anti-parallel
Strand 3	C	75	79	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8XI3

Analysis of interatomic Contacts of Structural Units in PDB entry:
8XI3