Analysis of interatomic Contacts of Structural Units in PDB entry:
8XIE

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8XIE entry

There are 9 chains in PDB entry 8XIE (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LYS 10	GLU 246
B	GLY 23	ARG 260
C	LYS 10	LYS 240
D	LYS 10	TYR 239
E	LYS 22	ARG 260
F	LYS 22	ARG 260
G	MET 1	ASP 227
I	ALA 0	LYS 226
H	LYS 9	ASP 227

There are 54 helices in PDB entry 8XIE. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	96	114	Right-handed alpha
Helix 2	AA2	A	115	119	Right-handed 310
Helix 3	AA3	A	136	152	Right-handed alpha
Helix 4	AA4	A	177	183	Right-handed alpha
Helix 5	AA5	A	209	239	Right-handed alpha
Helix 6	AA6	B	90	93	Right-handed 310
Helix 7	AA7	B	101	119	Right-handed alpha
Helix 8	AA8	B	150	165	Right-handed alpha
Helix 9	AA9	B	203	210	Right-handed alpha
Helix 10	AB1	B	236	258	Right-handed alpha
Helix 11	AB2	C	65	69	Right-handed 310
Helix 12	AB3	C	96	114	Right-handed alpha
Helix 13	AB4	C	115	119	Right-handed 310
Helix 14	AB5	C	136	153	Right-handed alpha
Helix 15	AB6	C	177	184	Right-handed alpha
Helix 16	AB7	C	209	237	Right-handed alpha
Helix 17	AB8	D	65	69	Right-handed 310
Helix 18	AB9	D	96	114	Right-handed alpha
Helix 19	AC1	D	115	119	Right-handed 310
Helix 20	AC2	D	136	153	Right-handed alpha
Helix 21	AC3	D	177	184	Right-handed alpha
Helix 22	AC4	D	210	239	Right-handed alpha
Helix 23	AC5	E	90	93	Right-handed 310
Helix 24	AC6	E	101	119	Right-handed alpha
Helix 25	AC7	E	150	165	Right-handed alpha
Helix 26	AC8	E	169	174	Right-handed 310
Helix 27	AC9	E	203	210	Right-handed alpha
Helix 28	AD1	E	236	258	Right-handed alpha
Helix 29	AD2	F	90	93	Right-handed 310
Helix 30	AD3	F	101	120	Right-handed alpha
Helix 31	AD4	F	150	165	Right-handed alpha
Helix 32	AD5	F	169	174	Right-handed 310
Helix 33	AD6	F	203	210	Right-handed alpha
Helix 34	AD7	F	236	258	Right-handed alpha
Helix 35	AD8	G	94	96	Right-handed 310
Helix 36	AD9	G	104	109	Right-handed alpha
Helix 37	AE1	G	149	151	Right-handed 310
Helix 38	AE2	G	152	158	Right-handed alpha
Helix 39	AE3	G	161	172	Right-handed alpha
Helix 40	AE4	G	188	205	Right-handed alpha
Helix 41	AE5	G	210	225	Right-handed alpha
Helix 42	AE6	I	94	96	Right-handed 310
Helix 43	AE7	I	104	109	Right-handed alpha
Helix 44	AE8	I	149	151	Right-handed 310
Helix 45	AE9	I	152	158	Right-handed alpha
Helix 46	AF1	I	161	172	Right-handed alpha
Helix 47	AF2	I	190	205	Right-handed alpha
Helix 48	AF3	I	210	225	Right-handed alpha
Helix 49	AF4	H	94	96	Right-handed 310
Helix 50	AF5	H	104	108	Right-handed 310
Helix 51	AF6	H	152	158	Right-handed alpha
Helix 52	AF7	H	161	172	Right-handed alpha
Helix 53	AF8	H	190	205	Right-handed alpha
Helix 54	AF9	H	210	225	Right-handed alpha

There are 25 sheets in PDB entry 8XIE. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	30	34	first strand
Strand 2	A	42	48	anti-parallel
Strand 3	A	51	61	anti-parallel
Strand 4	A	123	132	anti-parallel
Strand 5	A	75	82	parallel

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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	171	174	first strand
Strand 2	A	161	168	anti-parallel
Strand 3	A	186	192	anti-parallel
Strand 4	A	199	208	anti-parallel
Strand 5	B	224	230	anti-parallel
Strand 6	B	213	218	anti-parallel
Strand 7	B	187	194	anti-parallel
Strand 8	B	197	200	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	38	42	first strand
Strand 2	B	50	56	anti-parallel
Strand 3	B	59	70	anti-parallel
Strand 4	B	134	146	anti-parallel
Strand 5	B	81	88	parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	38	42	first strand
Strand 2	B	50	56	anti-parallel
Strand 3	B	59	70	anti-parallel
Strand 4	B	134	146	anti-parallel
Strand 5	B	128	130	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	30	34	first strand
Strand 2	C	42	48	anti-parallel
Strand 3	C	51	62	anti-parallel
Strand 4	C	122	132	anti-parallel
Strand 5	C	75	82	parallel

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There are 8 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	171	174	first strand
Strand 2	C	161	168	anti-parallel
Strand 3	C	186	192	anti-parallel
Strand 4	C	199	208	anti-parallel
Strand 5	E	224	230	anti-parallel
Strand 6	E	213	218	anti-parallel
Strand 7	E	187	194	anti-parallel
Strand 8	E	197	200	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	30	34	first strand
Strand 2	D	42	48	anti-parallel
Strand 3	D	51	62	anti-parallel
Strand 4	D	122	132	anti-parallel
Strand 5	D	75	82	parallel

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There are 8 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	171	174	first strand
Strand 2	D	161	168	anti-parallel
Strand 3	D	186	192	anti-parallel
Strand 4	D	199	209	anti-parallel
Strand 5	F	223	230	anti-parallel
Strand 6	F	213	218	anti-parallel
Strand 7	F	187	194	anti-parallel
Strand 8	F	197	200	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	38	42	first strand
Strand 2	E	50	56	anti-parallel
Strand 3	E	59	70	anti-parallel
Strand 4	E	134	146	anti-parallel
Strand 5	E	81	88	parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	38	42	first strand
Strand 2	E	50	56	anti-parallel
Strand 3	E	59	70	anti-parallel
Strand 4	E	134	146	anti-parallel
Strand 5	E	128	130	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	38	42	first strand
Strand 2	F	50	56	anti-parallel
Strand 3	F	59	70	anti-parallel
Strand 4	F	134	146	anti-parallel
Strand 5	F	81	88	parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	38	42	first strand
Strand 2	F	50	56	anti-parallel
Strand 3	F	59	70	anti-parallel
Strand 4	F	134	146	anti-parallel
Strand 5	F	128	130	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	22	23	first strand
Strand 2	G	49	54	parallel
Strand 3	G	41	45	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	27	29	first strand
Strand 2	G	35	37	anti-parallel

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There are 7 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	138	140	first strand
Strand 2	G	114	122	anti-parallel
Strand 3	G	128	131	anti-parallel
Strand 4	G	89	92	parallel
Strand 5	G	78	82	anti-parallel
Strand 6	G	66	74	anti-parallel
Strand 7	G	114	122	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	144	147	first strand
Strand 2	G	182	186	anti-parallel
Strand 3	G	174	177	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	7	11	first strand
Strand 2	I	41	44	anti-parallel
Strand 3	I	53	54	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	22	23	first strand
Strand 2	I	49	50	parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	27	29	first strand
Strand 2	I	35	37	anti-parallel

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There are 7 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	138	140	first strand
Strand 2	I	114	122	anti-parallel
Strand 3	I	128	131	anti-parallel
Strand 4	I	89	92	parallel
Strand 5	I	78	82	anti-parallel
Strand 6	I	66	74	anti-parallel
Strand 7	I	114	122	anti-parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	144	147	first strand
Strand 2	I	182	186	anti-parallel
Strand 3	I	174	177	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	10	11	first strand
Strand 2	H	41	45	anti-parallel
Strand 3	H	49	54	anti-parallel
Strand 4	H	22	23	parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	27	29	first strand
Strand 2	H	35	37	anti-parallel

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There are 7 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	138	140	first strand
Strand 2	H	114	122	anti-parallel
Strand 3	H	128	131	anti-parallel
Strand 4	H	89	92	parallel
Strand 5	H	78	82	anti-parallel
Strand 6	H	66	74	anti-parallel
Strand 7	H	114	122	anti-parallel

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There are 3 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	144	147	first strand
Strand 2	H	182	186	anti-parallel
Strand 3	H	174	177	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8XIE

Analysis of interatomic Contacts of Structural Units in PDB entry:
8XIE