Analysis of interatomic Contacts of Structural Units in PDB entry:
8XIH

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8XIH entry

There are 5 chains in PDB entry 8XIH (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LYS 2	LEU 774
B	LYS 2	PRO 773
G	T 0	A 7
H	T 1	T 16
E	A 3	A 9

There are 38 helices in PDB entry 8XIH. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	112	125	Right-handed alpha
Helix 2	AA2	A	292	298	Right-handed alpha
Helix 3	AA3	A	300	304	Right-handed 310
Helix 4	AA4	A	306	321	Right-handed alpha
Helix 5	AA5	A	365	370	Right-handed alpha
Helix 6	AA6	A	370	383	Right-handed alpha
Helix 7	AA7	A	406	423	Right-handed alpha
Helix 8	AA8	A	442	451	Right-handed alpha
Helix 9	AA9	A	451	456	Right-handed alpha
Helix 10	AB1	A	474	488	Right-handed alpha
Helix 11	AB2	A	500	506	Right-handed alpha
Helix 12	AB3	A	525	527	Right-handed 310
Helix 13	AB4	A	528	546	Right-handed alpha
Helix 14	AB5	A	603	624	Right-handed alpha
Helix 15	AB6	A	640	656	Right-handed alpha
Helix 16	AB7	A	735	748	Right-handed alpha
Helix 17	AB8	A	761	771	Right-handed alpha
Helix 18	AB9	B	13	17	Right-handed 310
Helix 19	AC1	B	37	54	Right-handed alpha
Helix 20	AC2	B	105	108	Right-handed 310
Helix 21	AC3	B	109	126	Right-handed alpha
Helix 22	AC4	B	190	194	Right-handed 310
Helix 23	AC5	B	197	201	Right-handed 310
Helix 24	AC6	B	243	250	Right-handed alpha
Helix 25	AC7	B	306	322	Right-handed alpha
Helix 26	AC8	B	365	370	Right-handed alpha
Helix 27	AC9	B	370	383	Right-handed alpha
Helix 28	AD1	B	405	423	Right-handed alpha
Helix 29	AD2	B	442	450	Right-handed alpha
Helix 30	AD3	B	451	456	Right-handed alpha
Helix 31	AD4	B	477	486	Right-handed alpha
Helix 32	AD5	B	500	505	Right-handed alpha
Helix 33	AD6	B	528	546	Right-handed alpha
Helix 34	AD7	B	579	582	Right-handed 310
Helix 35	AD8	B	602	624	Right-handed alpha
Helix 36	AD9	B	640	657	Right-handed alpha
Helix 37	AE1	B	735	748	Right-handed alpha
Helix 38	AE2	B	761	770	Right-handed alpha

There are 20 sheets in PDB entry 8XIH. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	340	341	first strand
Strand 2	A	4	6	anti-parallel
Strand 3	A	681	684	anti-parallel
Strand 4	A	691	692	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	9	10	first strand
Strand 2	A	170	181	anti-parallel
Strand 3	A	151	162	anti-parallel
Strand 4	A	137	139	anti-parallel
Strand 5	A	131	134	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	213	217	first strand
Strand 2	A	206	210	anti-parallel
Strand 3	A	286	287	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	326	327	first strand
Strand 2	A	330	331	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	356	359	first strand
Strand 2	A	351	353	anti-parallel
Strand 3	A	552	553	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	395	398	first strand
Strand 2	A	431	434	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	464	467	first strand
Strand 2	A	496	499	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	507	509	first strand
Strand 2	A	521	523	anti-parallel

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There are 8 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	584	590	first strand
Strand 2	A	571	577	anti-parallel
Strand 3	A	561	566	anti-parallel
Strand 4	A	630	635	parallel
Strand 5	A	666	672	parallel
Strand 6	A	725	732	anti-parallel
Strand 7	A	706	710	anti-parallel
Strand 8	A	698	703	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	340	341	first strand
Strand 2	B	4	6	anti-parallel
Strand 3	B	681	684	anti-parallel
Strand 4	B	691	692	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	8	10	first strand
Strand 2	B	170	181	anti-parallel
Strand 3	B	151	162	anti-parallel
Strand 4	B	137	139	anti-parallel
Strand 5	B	131	134	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	60	62	first strand
Strand 2	B	65	67	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	79	82	first strand
Strand 2	B	87	90	anti-parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	278	281	first strand
Strand 2	B	265	269	anti-parallel
Strand 3	B	215	221	anti-parallel
Strand 4	B	205	208	anti-parallel
Strand 5	B	285	287	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	325	326	first strand
Strand 2	B	331	332	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	356	359	first strand
Strand 2	B	351	353	anti-parallel
Strand 3	B	552	553	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	395	398	first strand
Strand 2	B	431	434	parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	465	467	first strand
Strand 2	B	497	499	parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	507	509	first strand
Strand 2	B	521	523	anti-parallel

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There are 8 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	584	590	first strand
Strand 2	B	571	577	anti-parallel
Strand 3	B	561	568	anti-parallel
Strand 4	B	629	635	parallel
Strand 5	B	665	672	parallel
Strand 6	B	725	729	anti-parallel
Strand 7	B	706	710	anti-parallel
Strand 8	B	698	703	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8XIH

Analysis of interatomic Contacts of Structural Units in PDB entry:
8XIH