Analysis of interatomic Contacts of Structural Units in PDB entry:
8XJ3


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8XJ3 entry

There are 2 chains in PDB entry 8XJ3 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL -5ALA 235
B
 MET 1ALA 235
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 18 helices in PDB entry 8XJ3. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
16 20Right-handed 310
Helix 2
AA2
A
21 31Right-handed alpha
Helix 3
AA3
A
45 54Right-handed alpha
Helix 4
AA4
A
71 92Right-handed alpha
Helix 5
AA5
A
109 121Right-handed alpha
Helix 6
AA6
A
133 143Right-handed alpha
Helix 7
AA7
A
160 164Right-handed 310
Helix 8
AA8
A
183 193Right-handed alpha
Helix 9
AA9
A
215 222Right-handed alpha
Helix 10
AB1
B
16 20Right-handed 310
Helix 11
AB2
B
21 31Right-handed alpha
Helix 12
AB3
B
45 54Right-handed alpha
Helix 13
AB4
B
71 92Right-handed alpha
Helix 14
AB5
B
109 121Right-handed alpha
Helix 15
AB6
B
133 143Right-handed alpha
Helix 16
AB7
B
162 167Right-handed alpha
Helix 17
AB8
B
183 192Right-handed alpha
Helix 18
AB9
B
215 222Right-handed alpha
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There are 3 sheets in PDB entry 8XJ3. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
60 65first strand
Strand 2
A
33 38parallel
Strand 3
A
96 100parallel
Strand 4
A
7 11parallel
Strand 5
A
126 129parallel
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There are 10 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
211 213first strand
Strand 2
A
197 203anti-parallel
Strand 3
A
228 234anti-parallel
Strand 4
A
173 177anti-parallel
Strand 5
A
152 156parallel
Strand 6
B
152 156anti-parallel
Strand 7
B
173 177parallel
Strand 8
B
228 234anti-parallel
Strand 9
B
197 203anti-parallel
Strand 10
B
211 213anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
60 65first strand
Strand 2
B
33 38parallel
Strand 3
B
96 100parallel
Strand 4
B
7 11parallel
Strand 5
B
126 129parallel
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