Analysis of interatomic Contacts of Structural Units in PDB entry:
8XJ4


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8XJ4 entry

There are 2 chains in PDB entry 8XJ4 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 LEU 31SER 377
A
 ALA 32SER 377
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 30 helices in PDB entry 8XJ4. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
B
59 63Right-handed 310
Helix 2
AA2
B
71 89Right-handed alpha
Helix 3
AA3
B
109 124Right-handed alpha
Helix 4
AA4
B
127 131Right-handed 310
Helix 5
AA5
B
161 174Right-handed alpha
Helix 6
AA6
B
174 182Right-handed alpha
Helix 7
AA7
B
185 196Right-handed alpha
Helix 8
AA8
B
201 209Right-handed alpha
Helix 9
AA9
B
209 219Right-handed alpha
Helix 10
AB1
B
228 248Right-handed alpha
Helix 11
AB2
B
251 259Right-handed alpha
Helix 12
AB3
B
260 277Right-handed alpha
Helix 13
AB4
B
289 301Right-handed alpha
Helix 14
AB5
B
353 361Right-handed alpha
Helix 15
AB6
B
362 364Right-handed 310
Helix 16
AB7
B
367 373Right-handed alpha
Helix 17
AB8
A
71 89Right-handed alpha
Helix 18
AB9
A
109 124Right-handed alpha
Helix 19
AC1
A
127 131Right-handed 310
Helix 20
AC2
A
161 174Right-handed alpha
Helix 21
AC3
A
174 182Right-handed alpha
Helix 22
AC4
A
185 196Right-handed alpha
Helix 23
AC5
A
201 209Right-handed alpha
Helix 24
AC6
A
209 219Right-handed alpha
Helix 25
AC7
A
228 248Right-handed alpha
Helix 26
AC8
A
251 259Right-handed alpha
Helix 27
AC9
A
260 277Right-handed alpha
Helix 28
AD1
A
289 301Right-handed alpha
Helix 29
AD2
A
353 360Right-handed alpha
Helix 30
AD3
A
367 373Right-handed alpha
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There are 4 sheets in PDB entry 8XJ4. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
144 145first strand
Strand 2
B
102 106parallel
Strand 3
B
283 287parallel
Strand 4
B
34 42parallel
Strand 5
B
313 321anti-parallel
Strand 6
B
324 332anti-parallel
Strand 7
B
340 341anti-parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
144 145first strand
Strand 2
B
102 106parallel
Strand 3
B
283 287parallel
Strand 4
B
34 42parallel
Strand 5
B
313 321anti-parallel
Strand 6
B
324 332anti-parallel
Strand 7
B
351 352anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
102 105first strand
Strand 2
A
283 287parallel
Strand 3
A
34 42parallel
Strand 4
A
313 321anti-parallel
Strand 5
A
324 332anti-parallel
Strand 6
A
340 342anti-parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
102 105first strand
Strand 2
A
283 287parallel
Strand 3
A
34 42parallel
Strand 4
A
313 321anti-parallel
Strand 5
A
324 332anti-parallel
Strand 6
A
351 352anti-parallel
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