Analysis of interatomic Contacts of Structural Units in PDB entry:
8XJ6

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8XJ6 entry

There are 6 chains in PDB entry 8XJ6 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASN 324	GLY 703
B	ASN 324	ASP 695
C	LYS 325	LEU 700
D	MET 1	LEU 700
E	LYS 234	GLY 703
F	ILE 5	THR 704

There are121 helices in PDB entry 8XJ6. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	324	336	Right-handed alpha
Helix 2	AA2	A	363	371	Right-handed alpha
Helix 3	AA3	A	376	381	Right-handed alpha
Helix 4	AA4	A	392	397	Right-handed alpha
Helix 5	AA5	A	457	469	Right-handed alpha
Helix 6	AA6	A	476	488	Right-handed alpha
Helix 7	AA7	A	508	521	Right-handed alpha
Helix 8	AA8	A	529	534	Right-handed alpha
Helix 9	AA9	A	544	548	Right-handed 310
Helix 10	AB1	A	571	576	Right-handed alpha
Helix 11	AB2	A	614	619	Right-handed alpha
Helix 12	AB3	A	633	635	Right-handed 310
Helix 13	AB4	A	636	641	Right-handed alpha
Helix 14	AB5	A	654	660	Right-handed alpha
Helix 15	AB6	A	664	680	Right-handed alpha
Helix 16	AB7	A	693	703	Right-handed alpha
Helix 17	AB8	B	325	336	Right-handed alpha
Helix 18	AB9	B	363	372	Right-handed alpha
Helix 19	AC1	B	373	375	Right-handed 310
Helix 20	AC2	B	376	384	Right-handed alpha
Helix 21	AC3	B	385	400	Right-handed alpha
Helix 22	AC4	B	430	435	Right-handed alpha
Helix 23	AC5	B	455	469	Right-handed alpha
Helix 24	AC6	B	476	488	Right-handed alpha
Helix 25	AC7	B	508	521	Right-handed alpha
Helix 26	AC8	B	529	534	Right-handed alpha
Helix 27	AC9	B	571	577	Right-handed alpha
Helix 28	AD1	B	614	619	Right-handed alpha
Helix 29	AD2	B	635	641	Right-handed alpha
Helix 30	AD3	B	654	661	Right-handed alpha
Helix 31	AD4	B	664	680	Right-handed alpha
Helix 32	AD5	C	326	337	Right-handed alpha
Helix 33	AD6	C	363	371	Right-handed alpha
Helix 34	AD7	C	372	375	Right-handed 310
Helix 35	AD8	C	376	381	Right-handed alpha
Helix 36	AD9	C	382	384	Right-handed 310
Helix 37	AE1	C	385	400	Right-handed alpha
Helix 38	AE2	C	432	436	Right-handed 310
Helix 39	AE3	C	455	469	Right-handed alpha
Helix 40	AE4	C	476	488	Right-handed alpha
Helix 41	AE5	C	508	521	Right-handed alpha
Helix 42	AE6	C	529	534	Right-handed alpha
Helix 43	AE7	C	542	546	Right-handed alpha
Helix 44	AE8	C	571	579	Right-handed alpha
Helix 45	AE9	C	617	619	Right-handed 310
Helix 46	AF1	C	635	641	Right-handed alpha
Helix 47	AF2	C	654	661	Right-handed alpha
Helix 48	AF3	C	664	680	Right-handed alpha
Helix 49	AF4	C	689	693	Right-handed 310
Helix 50	AF5	C	694	698	Right-handed 310
Helix 51	AF6	D	2	6	Right-handed alpha
Helix 52	AF7	D	20	26	Right-handed alpha
Helix 53	AF8	D	36	47	Right-handed alpha
Helix 54	AF9	D	78	104	Right-handed alpha
Helix 55	AG1	D	108	119	Right-handed alpha
Helix 56	AG2	D	144	161	Right-handed alpha
Helix 57	AG3	D	163	168	Right-handed alpha
Helix 58	AG4	D	171	174	Right-handed 310
Helix 59	AG5	D	203	208	Right-handed 310
Helix 60	AG6	D	325	336	Right-handed alpha
Helix 61	AG7	D	363	371	Right-handed alpha
Helix 62	AG8	D	376	381	Right-handed alpha
Helix 63	AG9	D	382	384	Right-handed 310
Helix 64	AH1	D	385	400	Right-handed alpha
Helix 65	AH2	D	430	435	Right-handed alpha
Helix 66	AH3	D	457	469	Right-handed alpha
Helix 67	AH4	D	476	488	Right-handed alpha
Helix 68	AH5	D	489	491	Right-handed 310
Helix 69	AH6	D	508	521	Right-handed alpha
Helix 70	AH7	D	529	534	Right-handed alpha
Helix 71	AH8	D	542	546	Right-handed alpha
Helix 72	AH9	D	571	577	Right-handed alpha
Helix 73	AI1	D	636	640	Right-handed 310
Helix 74	AI2	D	653	660	Right-handed alpha
Helix 75	AI3	D	664	680	Right-handed alpha
Helix 76	AI4	D	689	697	Right-handed 310
Helix 77	AI5	E	242	254	Right-handed alpha
Helix 78	AI6	E	260	264	Right-handed 310
Helix 79	AI7	E	324	336	Right-handed alpha
Helix 80	AI8	E	363	372	Right-handed alpha
Helix 81	AI9	E	373	375	Right-handed 310
Helix 82	AJ1	E	376	381	Right-handed alpha
Helix 83	AJ2	E	385	400	Right-handed alpha
Helix 84	AJ3	E	457	469	Right-handed alpha
Helix 85	AJ4	E	476	488	Right-handed alpha
Helix 86	AJ5	E	508	521	Right-handed alpha
Helix 87	AJ6	E	529	534	Right-handed alpha
Helix 88	AJ7	E	542	546	Right-handed alpha
Helix 89	AJ8	E	571	579	Right-handed alpha
Helix 90	AJ9	E	635	641	Right-handed alpha
Helix 91	AK1	E	654	661	Right-handed alpha
Helix 92	AK2	E	664	680	Right-handed alpha
Helix 93	AK3	E	693	703	Right-handed alpha
Helix 94	AK4	F	20	27	Right-handed alpha
Helix 95	AK5	F	37	47	Right-handed alpha
Helix 96	AK6	F	78	104	Right-handed alpha
Helix 97	AK7	F	108	119	Right-handed alpha
Helix 98	AK8	F	143	161	Right-handed alpha
Helix 99	AK9	F	163	168	Right-handed alpha
Helix 100	AL1	F	170	174	Right-handed 310
Helix 101	AL2	F	203	208	Right-handed 310
Helix 102	AL3	F	242	254	Right-handed alpha
Helix 103	AL4	F	282	286	Right-handed 310
Helix 104	AL5	F	310	314	Right-handed 310
Helix 105	AL6	F	324	336	Right-handed alpha
Helix 106	AL7	F	363	372	Right-handed alpha
Helix 107	AL8	F	373	375	Right-handed 310
Helix 108	AL9	F	376	381	Right-handed alpha
Helix 109	AM1	F	382	384	Right-handed 310
Helix 110	AM2	F	385	400	Right-handed alpha
Helix 111	AM3	F	431	436	Right-handed alpha
Helix 112	AM4	F	455	469	Right-handed alpha
Helix 113	AM5	F	476	488	Right-handed alpha
Helix 114	AM6	F	508	521	Right-handed alpha
Helix 115	AM7	F	529	534	Right-handed alpha
Helix 116	AM8	F	542	546	Right-handed alpha
Helix 117	AM9	F	571	579	Right-handed alpha
Helix 118	AN1	F	635	641	Right-handed alpha
Helix 119	AN2	F	654	661	Right-handed alpha
Helix 120	AN3	F	664	680	Right-handed alpha
Helix 121	AN4	F	696	703	Right-handed alpha

There are 38 sheets in PDB entry 8XJ6. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	339	341	first strand
Strand 2	A	347	350	anti-parallel
Strand 3	A	355	357	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	412	414	first strand
Strand 2	A	419	421	anti-parallel
Strand 3	A	427	428	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	524	526	first strand
Strand 2	A	552	556	parallel
Strand 3	A	599	604	parallel
Strand 4	A	498	502	parallel
Strand 5	A	621	625	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	628	631	first strand
Strand 2	A	647	650	parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	339	341	first strand
Strand 2	B	347	350	anti-parallel
Strand 3	B	355	357	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	412	415	first strand
Strand 2	B	418	421	anti-parallel
Strand 3	B	427	428	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	524	526	first strand
Strand 2	B	552	556	parallel
Strand 3	B	599	604	parallel
Strand 4	B	498	502	parallel
Strand 5	B	621	625	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	628	631	first strand
Strand 2	B	647	650	parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	339	341	first strand
Strand 2	C	347	350	anti-parallel
Strand 3	C	355	357	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	412	415	first strand
Strand 2	C	418	421	anti-parallel
Strand 3	C	427	428	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	524	526	first strand
Strand 2	C	552	556	parallel
Strand 3	C	599	604	parallel
Strand 4	C	498	503	parallel
Strand 5	C	621	626	parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	581	583	first strand
Strand 2	C	593	595	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	628	631	first strand
Strand 2	C	647	650	parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	7	8	first strand
Strand 2	D	212	213	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	32	35	first strand
Strand 2	D	11	14	anti-parallel
Strand 3	D	53	55	anti-parallel
Strand 4	D	180	181	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	120	122	first strand
Strand 2	D	131	143	anti-parallel
Strand 3	D	64	73	anti-parallel
Strand 4	D	169	170	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	120	122	first strand
Strand 2	D	131	143	anti-parallel
Strand 3	D	219	221	parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	124	125	first strand
Strand 2	D	195	196	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	339	341	first strand
Strand 2	D	347	350	anti-parallel
Strand 3	D	355	357	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	412	415	first strand
Strand 2	D	418	421	anti-parallel
Strand 3	D	427	428	anti-parallel

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There are 5 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	524	527	first strand
Strand 2	D	552	555	parallel
Strand 3	D	599	604	parallel
Strand 4	D	498	503	parallel
Strand 5	D	621	626	parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	581	582	first strand
Strand 2	D	594	595	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	628	631	first strand
Strand 2	D	647	650	parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	257	258	first strand
Strand 2	E	276	277	anti-parallel

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There are 3 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	294	299	first strand
Strand 2	E	302	307	anti-parallel
Strand 3	E	317	320	anti-parallel

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There are 3 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	339	341	first strand
Strand 2	E	347	350	anti-parallel
Strand 3	E	355	357	anti-parallel

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There are 3 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	412	414	first strand
Strand 2	E	419	421	anti-parallel
Strand 3	E	427	428	anti-parallel

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There are 5 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	524	527	first strand
Strand 2	E	552	555	parallel
Strand 3	E	599	604	parallel
Strand 4	E	498	503	parallel
Strand 5	E	621	626	parallel

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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	581	583	first strand
Strand 2	E	593	595	anti-parallel

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There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	628	631	first strand
Strand 2	E	647	650	parallel

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There are 4 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	32	36	first strand
Strand 2	F	10	14	anti-parallel
Strand 3	F	53	55	anti-parallel
Strand 4	F	180	181	anti-parallel

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There are 4 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	65	73	first strand
Strand 2	F	131	142	anti-parallel
Strand 3	F	120	125	anti-parallel
Strand 4	F	195	196	anti-parallel

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There are 3 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	65	73	first strand
Strand 2	F	131	142	anti-parallel
Strand 3	F	219	221	parallel

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There are 3 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	294	298	first strand
Strand 2	F	302	307	anti-parallel
Strand 3	F	317	320	anti-parallel

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There are 2 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	339	341	first strand
Strand 2	F	347	349	anti-parallel

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There are 3 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	412	415	first strand
Strand 2	F	418	421	anti-parallel
Strand 3	F	427	428	anti-parallel

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There are 5 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	524	526	first strand
Strand 2	F	552	555	parallel
Strand 3	F	599	604	parallel
Strand 4	F	498	503	parallel
Strand 5	F	621	626	parallel

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There are 2 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	628	631	first strand
Strand 2	F	647	650	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8XJ6

Analysis of interatomic Contacts of Structural Units in PDB entry:
8XJ6