Analysis of interatomic Contacts of Structural Units in PDB entry:
8XJ8

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8XJ8 entry

There are 7 chains in PDB entry 8XJ8 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
X	T 1	T 6
A	ASN 324	ILE 779
B	ASN 324	ASP 695
C	ASN 324	ILE 702
D	ASN 324	ILE 702
E	ASN 324	PHE 446
F	ASN 324	MET 684

There are 96 helices in PDB entry 8XJ8. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	324	335	Right-handed alpha
Helix 2	AA2	A	362	371	Right-handed alpha
Helix 3	AA3	A	372	375	Right-handed 310
Helix 4	AA4	A	376	381	Right-handed alpha
Helix 5	AA5	A	382	384	Right-handed 310
Helix 6	AA6	A	385	400	Right-handed alpha
Helix 7	AA7	A	430	435	Right-handed alpha
Helix 8	AA8	A	455	469	Right-handed alpha
Helix 9	AA9	A	475	484	Right-handed alpha
Helix 10	AB1	A	486	491	Right-handed 310
Helix 11	AB2	A	508	521	Right-handed alpha
Helix 12	AB3	A	529	534	Right-handed alpha
Helix 13	AB4	A	541	546	Right-handed alpha
Helix 14	AB5	A	570	577	Right-handed alpha
Helix 15	AB6	A	616	619	Right-handed 310
Helix 16	AB7	A	632	634	Right-handed 310
Helix 17	AB8	A	635	641	Right-handed alpha
Helix 18	AB9	A	654	661	Right-handed alpha
Helix 19	AC1	A	664	680	Right-handed alpha
Helix 20	AC2	A	689	695	Right-handed 310
Helix 21	AC3	A	696	705	Right-handed alpha
Helix 22	AC4	A	735	745	Right-handed alpha
Helix 23	AC5	A	752	762	Right-handed alpha
Helix 24	AC6	B	325	335	Right-handed alpha
Helix 25	AC7	B	362	371	Right-handed alpha
Helix 26	AC8	B	372	375	Right-handed 310
Helix 27	AC9	B	376	381	Right-handed alpha
Helix 28	AD1	B	382	384	Right-handed 310
Helix 29	AD2	B	385	400	Right-handed alpha
Helix 30	AD3	B	430	435	Right-handed alpha
Helix 31	AD4	B	455	469	Right-handed alpha
Helix 32	AD5	B	476	489	Right-handed alpha
Helix 33	AD6	B	508	521	Right-handed alpha
Helix 34	AD7	B	529	534	Right-handed alpha
Helix 35	AD8	B	541	546	Right-handed alpha
Helix 36	AD9	B	570	577	Right-handed alpha
Helix 37	AE1	B	614	619	Right-handed alpha
Helix 38	AE2	B	632	634	Right-handed 310
Helix 39	AE3	B	635	640	Right-handed alpha
Helix 40	AE4	B	654	661	Right-handed alpha
Helix 41	AE5	B	664	680	Right-handed alpha
Helix 42	AE6	B	689	693	Right-handed 310
Helix 43	AE7	C	325	336	Right-handed alpha
Helix 44	AE8	C	363	371	Right-handed alpha
Helix 45	AE9	C	372	375	Right-handed 310
Helix 46	AF1	C	376	382	Right-handed alpha
Helix 47	AF2	C	385	400	Right-handed alpha
Helix 48	AF3	C	455	469	Right-handed alpha
Helix 49	AF4	C	475	488	Right-handed alpha
Helix 50	AF5	C	489	491	Right-handed 310
Helix 51	AF6	C	510	521	Right-handed alpha
Helix 52	AF7	C	529	534	Right-handed alpha
Helix 53	AF8	C	541	546	Right-handed alpha
Helix 54	AF9	C	570	577	Right-handed alpha
Helix 55	AG1	C	616	619	Right-handed 310
Helix 56	AG2	C	632	634	Right-handed 310
Helix 57	AG3	C	635	642	Right-handed alpha
Helix 58	AG4	C	655	661	Right-handed alpha
Helix 59	AG5	C	664	680	Right-handed alpha
Helix 60	AG6	C	689	695	Right-handed 310
Helix 61	AG7	C	696	702	Right-handed alpha
Helix 62	AG8	D	325	335	Right-handed alpha
Helix 63	AG9	D	362	371	Right-handed alpha
Helix 64	AH1	D	372	375	Right-handed 310
Helix 65	AH2	D	376	381	Right-handed alpha
Helix 66	AH3	D	385	398	Right-handed alpha
Helix 67	AH4	D	432	436	Right-handed 310
Helix 68	AH5	D	454	462	Right-handed alpha
Helix 69	AH6	D	464	469	Right-handed alpha
Helix 70	AH7	D	475	488	Right-handed alpha
Helix 71	AH8	D	489	491	Right-handed 310
Helix 72	AH9	D	508	521	Right-handed alpha
Helix 73	AI1	D	541	546	Right-handed alpha
Helix 74	AI2	D	570	577	Right-handed alpha
Helix 75	AI3	D	614	619	Right-handed alpha
Helix 76	AI4	D	667	679	Right-handed alpha
Helix 77	AI5	D	689	695	Right-handed 310
Helix 78	AI6	D	696	702	Right-handed alpha
Helix 79	AI7	E	325	335	Right-handed alpha
Helix 80	AI8	E	363	372	Right-handed alpha
Helix 81	AI9	E	376	384	Right-handed 310
Helix 82	AJ1	E	385	400	Right-handed alpha
Helix 83	AJ2	F	325	335	Right-handed alpha
Helix 84	AJ3	F	363	371	Right-handed alpha
Helix 85	AJ4	F	372	375	Right-handed 310
Helix 86	AJ5	F	376	381	Right-handed alpha
Helix 87	AJ6	F	382	384	Right-handed 310
Helix 88	AJ7	F	385	400	Right-handed alpha
Helix 89	AJ8	F	423	425	Right-handed 310
Helix 90	AJ9	F	455	461	Right-handed alpha
Helix 91	AK1	F	461	468	Right-handed alpha
Helix 92	AK2	F	475	486	Right-handed alpha
Helix 93	AK3	F	508	521	Right-handed alpha
Helix 94	AK4	F	529	534	Right-handed alpha
Helix 95	AK5	F	573	578	Right-handed alpha
Helix 96	AK6	F	665	677	Right-handed alpha

There are 25 sheets in PDB entry 8XJ8. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	339	341	first strand
Strand 2	A	347	351	anti-parallel
Strand 3	A	354	356	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	412	414	first strand
Strand 2	A	419	421	anti-parallel
Strand 3	A	427	428	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	524	526	first strand
Strand 2	A	552	556	parallel
Strand 3	A	599	604	parallel
Strand 4	A	498	503	parallel
Strand 5	A	621	626	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	581	583	first strand
Strand 2	A	593	595	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	628	631	first strand
Strand 2	A	647	650	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	706	707	first strand
Strand 2	A	777	778	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	339	341	first strand
Strand 2	B	347	351	anti-parallel
Strand 3	B	354	356	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	412	414	first strand
Strand 2	B	419	421	anti-parallel
Strand 3	B	427	428	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	524	526	first strand
Strand 2	B	552	556	parallel
Strand 3	B	599	604	parallel
Strand 4	B	498	503	parallel
Strand 5	B	621	626	parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	581	583	first strand
Strand 2	B	593	595	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	628	631	first strand
Strand 2	B	647	650	parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	339	341	first strand
Strand 2	C	347	350	anti-parallel
Strand 3	C	355	356	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	412	414	first strand
Strand 2	C	419	421	anti-parallel
Strand 3	C	427	428	anti-parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	524	526	first strand
Strand 2	C	552	556	parallel
Strand 3	C	599	604	parallel
Strand 4	C	498	503	parallel
Strand 5	C	621	626	parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	581	583	first strand
Strand 2	C	593	595	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	628	631	first strand
Strand 2	C	647	650	parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	339	341	first strand
Strand 2	D	347	350	anti-parallel
Strand 3	D	355	358	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	412	414	first strand
Strand 2	D	419	421	anti-parallel
Strand 3	D	427	428	anti-parallel

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There are 5 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	524	527	first strand
Strand 2	D	552	555	parallel
Strand 3	D	599	604	parallel
Strand 4	D	498	503	parallel
Strand 5	D	621	626	parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	581	583	first strand
Strand 2	D	593	595	anti-parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	339	341	first strand
Strand 2	E	347	351	anti-parallel
Strand 3	E	354	355	anti-parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	412	415	first strand
Strand 2	E	418	421	anti-parallel
Strand 3	E	427	429	anti-parallel

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There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	339	341	first strand
Strand 2	F	347	350	anti-parallel
Strand 3	F	355	357	anti-parallel

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There are 3 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	412	415	first strand
Strand 2	F	418	421	anti-parallel
Strand 3	F	427	428	anti-parallel

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There are 5 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	524	525	first strand
Strand 2	F	552	553	parallel
Strand 3	F	599	603	parallel
Strand 4	F	498	501	parallel
Strand 5	F	621	624	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8XJ8

Analysis of interatomic Contacts of Structural Units in PDB entry:
8XJ8