Analysis of interatomic Contacts of Structural Units in PDB entry:
8XJC


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8XJC entry

There are 2 chains in PDB entry 8XJC (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 21VAL 297
B
 ASP 21LYS 298
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 15 helices in PDB entry 8XJC. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
22 29Right-handed alpha
Helix 2
AA2
A
30 32Right-handed 310
Helix 3
AA3
A
88 91Right-handed 310
Helix 4
AA4
A
168 173Right-handed alpha
Helix 5
AA5
A
227 230Right-handed 310
Helix 6
AA6
A
231 257Right-handed alpha
Helix 7
AA7
A
272 278Right-handed alpha
Helix 8
AA8
A
284 293Right-handed alpha
Helix 9
AA9
B
22 29Right-handed alpha
Helix 10
AB1
B
88 91Right-handed 310
Helix 11
AB2
B
168 173Right-handed alpha
Helix 12
AB3
B
227 230Right-handed 310
Helix 13
AB4
B
231 257Right-handed alpha
Helix 14
AB5
B
272 280Right-handed alpha
Helix 15
AB6
B
284 295Right-handed alpha
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There are 4 sheets in PDB entry 8XJC. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 11 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
142 148first strand
Strand 2
A
131 136anti-parallel
Strand 3
A
93 103anti-parallel
Strand 4
A
74 82anti-parallel
Strand 5
A
57 71anti-parallel
Strand 6
A
33 43anti-parallel
Strand 7
A
212 226anti-parallel
Strand 8
A
193 204anti-parallel
Strand 9
A
180 189anti-parallel
Strand 10
A
156 165anti-parallel
Strand 11
A
150 153anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
107 113first strand
Strand 2
A
116 121anti-parallel
Strand 3
A
262 263anti-parallel
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There are 11 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
142 148first strand
Strand 2
B
131 136anti-parallel
Strand 3
B
93 103anti-parallel
Strand 4
B
74 82anti-parallel
Strand 5
B
57 70anti-parallel
Strand 6
B
33 43anti-parallel
Strand 7
B
212 226anti-parallel
Strand 8
B
193 204anti-parallel
Strand 9
B
180 190anti-parallel
Strand 10
B
156 165anti-parallel
Strand 11
B
151 153anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
107 113first strand
Strand 2
B
116 121anti-parallel
Strand 3
B
262 263anti-parallel
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