Analysis of interatomic Contacts of Structural Units in PDB entry:
8XJH


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8XJH entry

There are 2 chains in PDB entry 8XJH (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 30ASP 232
B
 GLY 28ILE 236
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 19 helices in PDB entry 8XJH. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
38 40Right-handed 310
Helix 2
AA2
A
41 56Right-handed alpha
Helix 3
AA3
A
58 62Right-handed 310
Helix 4
AA4
A
65 76Right-handed alpha
Helix 5
AA5
A
123 128Right-handed 310
Helix 6
AA6
A
165 168Right-handed 310
Helix 7
AA7
A
171 188Right-handed alpha
Helix 8
AA8
A
200 210Right-handed alpha
Helix 9
AA9
A
225 230Right-handed alpha
Helix 10
AB1
B
38 40Right-handed 310
Helix 11
AB2
B
41 56Right-handed alpha
Helix 12
AB3
B
58 62Right-handed 310
Helix 13
AB4
B
65 74Right-handed alpha
Helix 14
AB5
B
123 128Right-handed 310
Helix 15
AB6
B
165 168Right-handed 310
Helix 16
AB7
B
171 188Right-handed alpha
Helix 17
AB8
B
200 210Right-handed alpha
Helix 18
AB9
B
225 230Right-handed alpha
Helix 19
AC1
B
231 234Right-handed 310
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There are 2 sheets in PDB entry 8XJH. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
109 112first strand
Strand 2
A
31 36anti-parallel
Strand 3
A
83 90anti-parallel
Strand 4
A
135 148anti-parallel
Strand 5
A
153 163anti-parallel
Strand 6
A
191 197parallel
Strand 7
B
218 224anti-parallel
Strand 8
A
213 215anti-parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
31 36first strand
Strand 2
B
83 90anti-parallel
Strand 3
B
136 146anti-parallel
Strand 4
B
155 163anti-parallel
Strand 5
B
191 197parallel
Strand 6
A
218 224anti-parallel
Strand 7
B
213 215anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il