Analysis of interatomic Contacts of Structural Units in PDB entry:
8XJS

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8XJS entry

There are 5 chains in PDB entry 8XJS (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
D	LEU 10	CYS 18
B	CYS 335	TYR 935
A	TYR 30	TYR 935
C	THR 4	PRO 63
E	CYS 6	PRO 63

There are 29 helices in PDB entry 8XJS. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	D	10	18	Right-handed alpha
Helix 2	AA2	B	350	355	Right-handed alpha
Helix 3	AA3	B	356	358	Right-handed 310
Helix 4	AA4	B	376	386	Right-handed alpha
Helix 5	AA5	B	462	472	Right-handed alpha
Helix 6	AA6	B	523	525	Right-handed 310
Helix 7	AA7	B	568	573	Right-handed alpha
Helix 8	AA8	B	719	741	Right-handed alpha
Helix 9	AA9	B	835	840	Right-handed alpha
Helix 10	AB1	B	890	897	Right-handed alpha
Helix 11	AB2	A	44	51	Right-handed 310
Helix 12	AB3	A	69	74	Right-handed alpha
Helix 13	AB4	A	159	163	Right-handed 310
Helix 14	AB5	A	166	170	Right-handed 310
Helix 15	AB6	A	282	295	Right-handed alpha
Helix 16	AB7	A	350	356	Right-handed alpha
Helix 17	AB8	A	377	386	Right-handed alpha
Helix 18	AB9	A	405	409	Right-handed 310
Helix 19	AC1	A	462	474	Right-handed alpha
Helix 20	AC2	A	523	525	Right-handed 310
Helix 21	AC3	A	569	573	Right-handed 310
Helix 22	AC4	A	665	670	Right-handed 310
Helix 23	AC5	A	835	840	Right-handed 310
Helix 24	AC6	A	890	897	Right-handed alpha
Helix 25	AC7	C	7	19	Right-handed alpha
Helix 26	AC8	C	43	48	Right-handed alpha
Helix 27	AC9	C	53	59	Right-handed alpha
Helix 28	AD1	E	8	18	Right-handed alpha
Helix 29	AD2	E	54	59	Right-handed alpha

There are 27 sheets in PDB entry 8XJS. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	340	348	first strand
Strand 2	B	362	369	parallel
Strand 3	B	390	392	parallel
Strand 4	B	414	415	parallel
Strand 5	B	447	448	parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	340	348	first strand
Strand 2	B	362	369	parallel
Strand 3	B	395	398	parallel
Strand 4	B	425	430	parallel
Strand 5	B	452	456	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	498	500	first strand
Strand 2	B	608	610	parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	502	507	first strand
Strand 2	B	512	516	anti-parallel
Strand 3	B	577	580	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	557	561	first strand
Strand 2	B	527	536	anti-parallel
Strand 3	B	588	597	anti-parallel
Strand 4	B	613	616	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	626	634	first strand
Strand 2	B	637	643	anti-parallel
Strand 3	B	794	797	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	786	789	first strand
Strand 2	B	655	661	anti-parallel
Strand 3	B	805	811	anti-parallel
Strand 4	B	827	831	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	846	850	first strand
Strand 2	B	854	858	anti-parallel
Strand 3	B	899	902	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	883	889	first strand
Strand 2	B	869	878	anti-parallel
Strand 3	B	907	917	anti-parallel
Strand 4	B	928	932	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	33	35	first strand
Strand 2	A	53	56	parallel
Strand 3	A	83	84	parallel
Strand 4	A	108	109	parallel
Strand 5	A	138	139	parallel

Back to list of sheets
Back to top of page

There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	38	40	first strand
Strand 2	A	60	65	parallel
Strand 3	A	88	93	parallel
Strand 4	A	120	123	parallel
Strand 5	A	144	147	parallel
Strand 6	A	171	173	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	199	201	first strand
Strand 2	A	204	206	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	239	243	first strand
Strand 2	A	252	255	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	258	260	first strand
Strand 2	A	263	265	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	273	275	first strand
Strand 2	A	279	281	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	305	307	first strand
Strand 2	A	310	312	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	319	321	first strand
Strand 2	A	328	330	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	338	348	first strand
Strand 2	A	362	369	parallel
Strand 3	A	390	391	parallel
Strand 4	A	414	415	parallel
Strand 5	A	447	448	parallel

Back to list of sheets
Back to top of page

There are 5 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	338	348	first strand
Strand 2	A	362	369	parallel
Strand 3	A	395	397	parallel
Strand 4	A	425	429	parallel
Strand 5	A	452	455	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	498	500	first strand
Strand 2	A	608	610	parallel

Back to list of sheets
Back to top of page

There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	502	507	first strand
Strand 2	A	512	516	anti-parallel
Strand 3	A	577	580	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	557	561	first strand
Strand 2	A	527	536	anti-parallel
Strand 3	A	588	597	anti-parallel
Strand 4	A	613	616	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	626	631	first strand
Strand 2	A	637	643	anti-parallel
Strand 3	A	794	798	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	786	789	first strand
Strand 2	A	654	661	anti-parallel
Strand 3	A	805	813	anti-parallel
Strand 4	A	826	831	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	846	849	first strand
Strand 2	A	854	858	anti-parallel
Strand 3	A	899	902	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	883	889	first strand
Strand 2	A	869	878	anti-parallel
Strand 3	A	907	917	anti-parallel
Strand 4	A	921	924	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	883	889	first strand
Strand 2	A	869	878	anti-parallel
Strand 3	A	907	917	anti-parallel
Strand 4	A	928	932	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8XJS

Analysis of interatomic Contacts of Structural Units in PDB entry:
8XJS