Analysis of interatomic Contacts of Structural Units in PDB entry:
8XJT

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8XJT entry

There are 3 chains in PDB entry 8XJT (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLU 2	GLY 748
B	GLU 2	GLY 748
C	MET 786	GLN 854

There are 55 helices in PDB entry 8XJT. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	27	37	Right-handed alpha
Helix 2	AA2	A	49	53	Right-handed 310
Helix 3	AA3	A	55	60	Right-handed alpha
Helix 4	AA4	A	86	91	Right-handed alpha
Helix 5	AA5	A	93	111	Right-handed alpha
Helix 6	AA6	A	131	139	Right-handed alpha
Helix 7	AA7	A	144	154	Right-handed alpha
Helix 8	AA8	A	160	168	Right-handed alpha
Helix 9	AA9	A	182	196	Right-handed alpha
Helix 10	AB1	A	256	261	Right-handed alpha
Helix 11	AB2	A	290	303	Right-handed alpha
Helix 12	AB3	A	323	336	Right-handed alpha
Helix 13	AB4	A	348	352	Right-handed 310
Helix 14	AB5	A	359	375	Right-handed alpha
Helix 15	AB6	A	457	466	Right-handed alpha
Helix 16	AB7	A	467	475	Right-handed alpha
Helix 17	AB8	A	478	486	Right-handed alpha
Helix 18	AB9	A	537	542	Right-handed 310
Helix 19	AC1	A	544	558	Right-handed alpha
Helix 20	AC2	A	570	578	Right-handed 310
Helix 21	AC3	A	579	596	Right-handed alpha
Helix 22	AC4	A	606	608	Right-handed 310
Helix 23	AC5	A	609	618	Right-handed alpha
Helix 24	AC6	A	622	635	Right-handed alpha
Helix 25	AC7	A	667	676	Right-handed alpha
Helix 26	AC8	A	701	713	Right-handed alpha
Helix 27	AC9	B	26	36	Right-handed alpha
Helix 28	AD1	B	46	51	Right-handed alpha
Helix 29	AD2	B	55	60	Right-handed alpha
Helix 30	AD3	B	78	83	Right-handed alpha
Helix 31	AD4	B	85	91	Right-handed alpha
Helix 32	AD5	B	93	109	Right-handed alpha
Helix 33	AD6	B	131	138	Right-handed alpha
Helix 34	AD7	B	145	155	Right-handed alpha
Helix 35	AD8	B	160	168	Right-handed alpha
Helix 36	AD9	B	182	197	Right-handed alpha
Helix 37	AE1	B	255	262	Right-handed alpha
Helix 38	AE2	B	290	303	Right-handed alpha
Helix 39	AE3	B	323	335	Right-handed alpha
Helix 40	AE4	B	348	352	Right-handed 310
Helix 41	AE5	B	359	375	Right-handed alpha
Helix 42	AE6	B	457	467	Right-handed alpha
Helix 43	AE7	B	467	475	Right-handed alpha
Helix 44	AE8	B	476	486	Right-handed alpha
Helix 45	AE9	B	542	560	Right-handed alpha
Helix 46	AF1	B	578	596	Right-handed alpha
Helix 47	AF2	B	609	617	Right-handed alpha
Helix 48	AF3	B	621	635	Right-handed alpha
Helix 49	AF4	B	668	674	Right-handed alpha
Helix 50	AF5	B	701	715	Right-handed alpha
Helix 51	AF6	B	719	723	Right-handed 310
Helix 52	AF7	C	787	797	Right-handed alpha
Helix 53	AF8	C	817	829	Right-handed alpha
Helix 54	AF9	C	834	839	Right-handed alpha
Helix 55	AG1	C	843	854	Right-handed alpha

There are 12 sheets in PDB entry 8XJT. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	253	255	first strand
Strand 2	A	12	14	anti-parallel
Strand 3	A	269	270	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	274	277	first strand
Strand 2	A	425	429	anti-parallel
Strand 3	A	415	420	anti-parallel
Strand 4	A	313	315	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	376	377	first strand
Strand 2	A	404	405	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	449	455	first strand
Strand 2	A	493	499	anti-parallel
Strand 3	A	506	507	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	520	521	first strand
Strand 2	A	690	691	parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	12	13	first strand
Strand 2	B	268	270	anti-parallel
Strand 3	B	426	433	anti-parallel
Strand 4	B	274	276	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	12	13	first strand
Strand 2	B	268	270	anti-parallel
Strand 3	B	426	433	anti-parallel
Strand 4	B	414	420	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	122	123	first strand
Strand 2	B	203	204	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	376	377	first strand
Strand 2	B	404	405	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	449	451	first strand
Strand 2	B	497	499	anti-parallel
Strand 3	B	505	507	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	454	455	first strand
Strand 2	B	493	494	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	520	521	first strand
Strand 2	B	690	691	parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8XJT

Analysis of interatomic Contacts of Structural Units in PDB entry:
8XJT