Analysis of interatomic Contacts of Structural Units in PDB entry:
8XJU

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8XJU entry

There are 2 chains in PDB entry 8XJU (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PHE 6	ASP 878
B	PHE 6	SER 879

There are 69 helices in PDB entry 8XJU. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	23	32	Right-handed alpha
Helix 2	AA2	A	41	49	Right-handed alpha
Helix 3	AA3	A	51	56	Right-handed alpha
Helix 4	AA4	A	81	87	Right-handed alpha
Helix 5	AA5	A	89	107	Right-handed alpha
Helix 6	AA6	A	109	113	Right-handed 310
Helix 7	AA7	A	128	134	Right-handed alpha
Helix 8	AA8	A	156	165	Right-handed alpha
Helix 9	AA9	A	179	194	Right-handed alpha
Helix 10	AB1	A	253	259	Right-handed alpha
Helix 11	AB2	A	286	301	Right-handed alpha
Helix 12	AB3	A	304	306	Right-handed 310
Helix 13	AB4	A	321	333	Right-handed alpha
Helix 14	AB5	A	359	373	Right-handed alpha
Helix 15	AB6	A	436	440	Right-handed 310
Helix 16	AB7	A	455	471	Right-handed alpha
Helix 17	AB8	A	477	487	Right-handed alpha
Helix 18	AB9	A	502	512	Right-handed alpha
Helix 19	AC1	A	544	551	Right-handed alpha
Helix 20	AC2	A	551	568	Right-handed alpha
Helix 21	AC3	A	572	579	Right-handed alpha
Helix 22	AC4	A	583	590	Right-handed alpha
Helix 23	AC5	A	592	595	Right-handed 310
Helix 24	AC6	A	596	612	Right-handed alpha
Helix 25	AC7	A	613	615	Right-handed 310
Helix 26	AC8	A	626	636	Right-handed alpha
Helix 27	AC9	A	639	657	Right-handed alpha
Helix 28	AD1	A	668	673	Right-handed alpha
Helix 29	AD2	A	696	707	Right-handed alpha
Helix 30	AD3	A	728	738	Right-handed alpha
Helix 31	AD4	A	771	777	Right-handed alpha
Helix 32	AD5	A	780	792	Right-handed alpha
Helix 33	AD6	A	803	808	Right-handed alpha
Helix 34	AD7	A	828	830	Right-handed 310
Helix 35	AD8	A	831	847	Right-handed alpha
Helix 36	AD9	A	851	855	Right-handed 310
Helix 37	AE1	B	24	31	Right-handed alpha
Helix 38	AE2	B	41	46	Right-handed alpha
Helix 39	AE3	B	74	79	Right-handed alpha
Helix 40	AE4	B	89	107	Right-handed alpha
Helix 41	AE5	B	109	113	Right-handed 310
Helix 42	AE6	B	128	134	Right-handed alpha
Helix 43	AE7	B	156	165	Right-handed alpha
Helix 44	AE8	B	179	194	Right-handed alpha
Helix 45	AE9	B	253	259	Right-handed alpha
Helix 46	AF1	B	286	301	Right-handed alpha
Helix 47	AF2	B	321	333	Right-handed alpha
Helix 48	AF3	B	346	350	Right-handed 310
Helix 49	AF4	B	354	356	Right-handed 310
Helix 50	AF5	B	357	373	Right-handed alpha
Helix 51	AF6	B	455	471	Right-handed alpha
Helix 52	AF7	B	482	488	Right-handed alpha
Helix 53	AF8	B	502	511	Right-handed alpha
Helix 54	AF9	B	544	551	Right-handed alpha
Helix 55	AG1	B	551	569	Right-handed alpha
Helix 56	AG2	B	583	588	Right-handed alpha
Helix 57	AG3	B	592	614	Right-handed alpha
Helix 58	AG4	B	626	636	Right-handed alpha
Helix 59	AG5	B	639	654	Right-handed alpha
Helix 60	AG6	B	668	675	Right-handed alpha
Helix 61	AG7	B	696	702	Right-handed alpha
Helix 62	AG8	B	705	711	Right-handed alpha
Helix 63	AG9	B	728	740	Right-handed alpha
Helix 64	AH1	B	761	767	Right-handed alpha
Helix 65	AH2	B	767	775	Right-handed alpha
Helix 66	AH3	B	785	792	Right-handed alpha
Helix 67	AH4	B	803	812	Right-handed alpha
Helix 68	AH5	B	831	847	Right-handed alpha
Helix 69	AH6	B	851	856	Right-handed 310

There are 13 sheets in PDB entry 8XJU. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4,

There are 11 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	171	173	first strand
Strand 2	A	117	121	parallel
Strand 3	A	199	206	parallel
Strand 4	A	244	252	anti-parallel
Strand 5	A	8	14	anti-parallel
Strand 6	A	265	273	anti-parallel
Strand 7	A	424	431	anti-parallel
Strand 8	A	412	418	anti-parallel
Strand 9	A	308	312	parallel
Strand 10	A	342	345	parallel
Strand 11	A	395	397	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	38	39	first strand
Strand 2	A	63	64	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	374	375	first strand
Strand 2	A	402	403	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	447	448	first strand
Strand 2	A	499	500	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	451	453	first strand
Strand 2	A	494	497	anti-parallel
Strand 3	A	519	522	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	620	622	first strand
Strand 2	A	529	533	parallel
Strand 3	A	795	799	parallel
Strand 4	A	819	821	parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	681	687	first strand
Strand 2	A	690	695	anti-parallel
Strand 3	A	661	665	anti-parallel
Strand 4	A	714	716	anti-parallel

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There are 11 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	171	173	first strand
Strand 2	B	117	123	parallel
Strand 3	B	199	206	parallel
Strand 4	B	244	252	anti-parallel
Strand 5	B	8	14	anti-parallel
Strand 6	B	265	274	anti-parallel
Strand 7	B	423	431	anti-parallel
Strand 8	B	412	418	anti-parallel
Strand 9	B	308	312	parallel
Strand 10	B	342	345	parallel
Strand 11	B	395	397	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	38	39	first strand
Strand 2	B	63	64	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	374	375	first strand
Strand 2	B	402	403	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	447	453	first strand
Strand 2	B	494	500	anti-parallel
Strand 3	B	519	522	anti-parallel

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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	758	759	first strand
Strand 2	B	750	753	anti-parallel
Strand 3	B	618	622	parallel
Strand 4	B	529	533	parallel
Strand 5	B	795	799	parallel
Strand 6	B	819	821	parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	714	715	first strand
Strand 2	B	662	665	anti-parallel
Strand 3	B	690	694	anti-parallel
Strand 4	B	681	687	anti-parallel
Strand 5	B	779	780	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8XJU

Analysis of interatomic Contacts of Structural Units in PDB entry:
8XJU