Analysis of interatomic Contacts of Structural Units in PDB entry:
8XJW


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8XJW entry

There are 3 chains in PDB entry 8XJW (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1VAL 737
B
 T 1 T 16
C
 A 1 C 15
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 22 helices in PDB entry 8XJW. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
13 17Right-handed 310
Helix 2
AA2
A
36 48Right-handed alpha
Helix 3
AA3
A
84 107Right-handed alpha
Helix 4
AA4
A
159 166Right-handed alpha
Helix 5
AA5
A
260 269Right-handed alpha
Helix 6
AA6
A
271 288Right-handed alpha
Helix 7
AA7
A
326 331Right-handed alpha
Helix 8
AA8
A
349 354Right-handed alpha
Helix 9
AA9
A
358 375Right-handed alpha
Helix 10
AB1
A
394 399Right-handed alpha
Helix 11
AB2
A
405 407Right-handed 310
Helix 12
AB3
A
408 413Right-handed alpha
Helix 13
AB4
A
422 428Right-handed alpha
Helix 14
AB5
A
432 442Right-handed alpha
Helix 15
AB6
A
453 467Right-handed alpha
Helix 16
AB7
A
476 488Right-handed alpha
Helix 17
AB8
A
491 507Right-handed alpha
Helix 18
AB9
A
565 585Right-handed alpha
Helix 19
AC1
A
602 611Right-handed alpha
Helix 20
AC2
A
681 692Right-handed alpha
Helix 21
AC3
A
693 695Right-handed 310
Helix 22
AC4
A
709 722Right-handed alpha
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There are 9 sheets in PDB entry 8XJW. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2 5first strand
Strand 2
A
630 634anti-parallel
Strand 3
A
639 641anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
7 9first strand
Strand 2
A
144 156anti-parallel
Strand 3
A
127 139anti-parallel
Strand 4
A
116 117anti-parallel
Strand 5
A
110 111anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
7 9first strand
Strand 2
A
144 156anti-parallel
Strand 3
A
127 139anti-parallel
Strand 4
A
122 124anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
51 54first strand
Strand 2
A
57 60anti-parallel
Strand 3
A
19 23anti-parallel
Strand 4
A
74 78anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
176 178first strand
Strand 2
A
247 249anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
231 233first strand
Strand 2
A
240 242anti-parallel
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There are 9 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
308 311first strand
Strand 2
A
646 650anti-parallel
Strand 3
A
653 657anti-parallel
Strand 4
A
671 674anti-parallel
Strand 5
A
616 623anti-parallel
Strand 6
A
590 596parallel
Strand 7
A
522 530parallel
Strand 8
A
535 542anti-parallel
Strand 9
A
558 559anti-parallel
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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
322 323first strand
Strand 2
A
317 318anti-parallel
Strand 3
A
513 514anti-parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
379 382first strand
Strand 2
A
340 346parallel
Strand 3
A
416 419parallel
Strand 4
A
449 451parallel
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