Analysis of interatomic Contacts of Structural Units in PDB entry:
8XJY

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8XJY entry

There are 4 chains in PDB entry 8XJY (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY 7	SER 879
B	GLY 7	PRO 880
C	ALA 916	ASP 994
D	ALA 916	ASP 994

There are 76 helices in PDB entry 8XJY. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	23	32	Right-handed alpha
Helix 2	AA2	A	45	49	Right-handed 310
Helix 3	AA3	A	51	57	Right-handed alpha
Helix 4	AA4	A	74	79	Right-handed alpha
Helix 5	AA5	A	84	88	Right-handed 310
Helix 6	AA6	A	89	106	Right-handed alpha
Helix 7	AA7	A	129	134	Right-handed alpha
Helix 8	AA8	A	143	154	Right-handed alpha
Helix 9	AA9	A	179	192	Right-handed alpha
Helix 10	AB1	A	253	260	Right-handed alpha
Helix 11	AB2	A	287	301	Right-handed alpha
Helix 12	AB3	A	320	333	Right-handed alpha
Helix 13	AB4	A	346	350	Right-handed 310
Helix 14	AB5	A	360	373	Right-handed alpha
Helix 15	AB6	A	455	470	Right-handed alpha
Helix 16	AB7	A	477	483	Right-handed alpha
Helix 17	AB8	A	502	511	Right-handed alpha
Helix 18	AB9	A	544	551	Right-handed alpha
Helix 19	AC1	A	551	559	Right-handed alpha
Helix 20	AC2	A	561	568	Right-handed alpha
Helix 21	AC3	A	572	578	Right-handed alpha
Helix 22	AC4	A	592	595	Right-handed 310
Helix 23	AC5	A	596	614	Right-handed alpha
Helix 24	AC6	A	626	635	Right-handed alpha
Helix 25	AC7	A	639	655	Right-handed alpha
Helix 26	AC8	A	668	676	Right-handed alpha
Helix 27	AC9	A	697	709	Right-handed alpha
Helix 28	AD1	A	728	735	Right-handed alpha
Helix 29	AD2	A	736	738	Right-handed 310
Helix 30	AD3	A	767	774	Right-handed alpha
Helix 31	AD4	A	781	792	Right-handed alpha
Helix 32	AD5	A	803	811	Right-handed alpha
Helix 33	AD6	A	831	847	Right-handed alpha
Helix 34	AD7	A	852	856	Right-handed 310
Helix 35	AD8	B	23	31	Right-handed alpha
Helix 36	AD9	B	42	49	Right-handed alpha
Helix 37	AE1	B	74	79	Right-handed alpha
Helix 38	AE2	B	84	88	Right-handed 310
Helix 39	AE3	B	89	107	Right-handed alpha
Helix 40	AE4	B	128	138	Right-handed alpha
Helix 41	AE5	B	143	153	Right-handed alpha
Helix 42	AE6	B	156	165	Right-handed alpha
Helix 43	AE7	B	179	194	Right-handed alpha
Helix 44	AE8	B	253	259	Right-handed alpha
Helix 45	AE9	B	287	301	Right-handed alpha
Helix 46	AF1	B	320	333	Right-handed alpha
Helix 47	AF2	B	346	350	Right-handed 310
Helix 48	AF3	B	357	373	Right-handed alpha
Helix 49	AF4	B	455	470	Right-handed alpha
Helix 50	AF5	B	482	488	Right-handed alpha
Helix 51	AF6	B	502	513	Right-handed alpha
Helix 52	AF7	B	544	551	Right-handed alpha
Helix 53	AF8	B	551	569	Right-handed alpha
Helix 54	AF9	B	583	590	Right-handed alpha
Helix 55	AG1	B	592	614	Right-handed alpha
Helix 56	AG2	B	625	635	Right-handed alpha
Helix 57	AG3	B	639	655	Right-handed alpha
Helix 58	AG4	B	668	674	Right-handed alpha
Helix 59	AG5	B	696	710	Right-handed alpha
Helix 60	AG6	B	725	727	Right-handed 310
Helix 61	AG7	B	728	734	Right-handed alpha
Helix 62	AG8	B	735	740	Right-handed alpha
Helix 63	AG9	B	769	774	Right-handed alpha
Helix 64	AH1	B	781	792	Right-handed alpha
Helix 65	AH2	B	803	810	Right-handed alpha
Helix 66	AH3	B	828	830	Right-handed 310
Helix 67	AH4	B	831	847	Right-handed alpha
Helix 68	AH5	B	851	856	Right-handed 310
Helix 69	AH6	C	921	934	Right-handed alpha
Helix 70	AH7	C	952	962	Right-handed alpha
Helix 71	AH8	C	972	978	Right-handed alpha
Helix 72	AH9	C	980	994	Right-handed alpha
Helix 73	AI1	D	921	933	Right-handed alpha
Helix 74	AI2	D	952	964	Right-handed alpha
Helix 75	AI3	D	972	978	Right-handed alpha
Helix 76	AI4	D	980	994	Right-handed alpha

There are 17 sheets in PDB entry 8XJY. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	117	120	first strand
Strand 2	A	199	205	parallel
Strand 3	A	245	252	anti-parallel
Strand 4	A	8	14	anti-parallel
Strand 5	A	265	274	anti-parallel
Strand 6	A	423	430	anti-parallel
Strand 7	A	415	418	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	38	39	first strand
Strand 2	A	63	64	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	72	73	first strand
Strand 2	A	873	874	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	374	375	first strand
Strand 2	A	402	403	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	447	453	first strand
Strand 2	A	494	500	anti-parallel
Strand 3	A	519	522	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	618	620	first strand
Strand 2	A	529	533	parallel
Strand 3	A	795	799	parallel
Strand 4	A	819	821	parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	714	716	first strand
Strand 2	A	661	665	anti-parallel
Strand 3	A	690	695	anti-parallel
Strand 4	A	681	687	anti-parallel
Strand 5	A	779	780	parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	117	121	first strand
Strand 2	B	199	206	parallel
Strand 3	B	244	252	anti-parallel
Strand 4	B	8	14	anti-parallel
Strand 5	B	266	267	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	38	39	first strand
Strand 2	B	63	64	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	72	73	first strand
Strand 2	B	873	874	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	269	273	first strand
Strand 2	B	424	428	anti-parallel
Strand 3	B	415	418	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	310	312	first strand
Strand 2	B	342	345	parallel
Strand 3	B	395	397	parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	374	375	first strand
Strand 2	B	402	403	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	447	453	first strand
Strand 2	B	494	500	anti-parallel
Strand 3	B	519	521	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	618	622	first strand
Strand 2	B	529	533	parallel
Strand 3	B	796	799	parallel
Strand 4	B	819	820	parallel

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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	714	715	first strand
Strand 2	B	661	665	anti-parallel
Strand 3	B	690	695	anti-parallel
Strand 4	B	682	687	anti-parallel
Strand 5	B	779	780	parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	752	753	first strand
Strand 2	B	758	759	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8XJY

Analysis of interatomic Contacts of Structural Units in PDB entry:
8XJY