Analysis of interatomic Contacts of Structural Units in PDB entry:
8XJZ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8XJZ entry

There are 4 chains in PDB entry 8XJZ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PHE 6	GLU 882
B	PHE 6	ARG 884
C	LEU 1494	ALA 1562
D	UNK 2	UNK 27

There are 66 helices in PDB entry 8XJZ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	26	32	Right-handed alpha
Helix 2	AA2	A	51	56	Right-handed alpha
Helix 3	AA3	A	74	79	Right-handed alpha
Helix 4	AA4	A	94	104	Right-handed alpha
Helix 5	AA5	A	109	113	Right-handed 310
Helix 6	AA6	A	128	134	Right-handed alpha
Helix 7	AA7	A	153	155	Right-handed 310
Helix 8	AA8	A	156	164	Right-handed alpha
Helix 9	AA9	A	179	194	Right-handed alpha
Helix 10	AB1	A	253	260	Right-handed alpha
Helix 11	AB2	A	288	301	Right-handed alpha
Helix 12	AB3	A	304	308	Right-handed 310
Helix 13	AB4	A	320	333	Right-handed alpha
Helix 14	AB5	A	346	350	Right-handed 310
Helix 15	AB6	A	360	373	Right-handed alpha
Helix 16	AB7	A	436	440	Right-handed 310
Helix 17	AB8	A	456	461	Right-handed alpha
Helix 18	AB9	A	464	469	Right-handed alpha
Helix 19	AC1	A	478	483	Right-handed alpha
Helix 20	AC2	A	502	512	Right-handed alpha
Helix 21	AC3	A	545	551	Right-handed alpha
Helix 22	AC4	A	551	558	Right-handed alpha
Helix 23	AC5	A	560	566	Right-handed alpha
Helix 24	AC6	A	574	579	Right-handed alpha
Helix 25	AC7	A	596	611	Right-handed alpha
Helix 26	AC8	A	626	636	Right-handed alpha
Helix 27	AC9	A	639	646	Right-handed alpha
Helix 28	AD1	A	646	656	Right-handed alpha
Helix 29	AD2	A	671	675	Right-handed 310
Helix 30	AD3	A	696	707	Right-handed alpha
Helix 31	AD4	A	732	738	Right-handed alpha
Helix 32	AD5	A	767	777	Right-handed alpha
Helix 33	AD6	A	781	792	Right-handed alpha
Helix 34	AD7	A	806	811	Right-handed alpha
Helix 35	AD8	A	831	847	Right-handed alpha
Helix 36	AD9	A	851	855	Right-handed 310
Helix 37	AE1	B	74	78	Right-handed 310
Helix 38	AE2	B	89	105	Right-handed alpha
Helix 39	AE3	B	156	164	Right-handed alpha
Helix 40	AE4	B	179	192	Right-handed alpha
Helix 41	AE5	B	289	302	Right-handed alpha
Helix 42	AE6	B	320	333	Right-handed alpha
Helix 43	AE7	B	359	373	Right-handed alpha
Helix 44	AE8	B	455	458	Right-handed 310
Helix 45	AE9	B	459	464	Right-handed alpha
Helix 46	AF1	B	465	471	Right-handed alpha
Helix 47	AF2	B	502	510	Right-handed alpha
Helix 48	AF3	B	551	569	Right-handed alpha
Helix 49	AF4	B	583	591	Right-handed alpha
Helix 50	AF5	B	592	614	Right-handed alpha
Helix 51	AF6	B	627	632	Right-handed alpha
Helix 52	AF7	B	639	654	Right-handed alpha
Helix 53	AF8	B	668	675	Right-handed alpha
Helix 54	AF9	B	698	710	Right-handed alpha
Helix 55	AG1	B	729	740	Right-handed alpha
Helix 56	AG2	B	768	777	Right-handed alpha
Helix 57	AG3	B	782	785	Right-handed 310
Helix 58	AG4	B	787	792	Right-handed alpha
Helix 59	AG5	B	803	810	Right-handed alpha
Helix 60	AG6	B	834	845	Right-handed alpha
Helix 61	AG7	B	879	884	Right-handed alpha
Helix 62	AG8	C	1495	1503	Right-handed alpha
Helix 63	AG9	C	1525	1538	Right-handed alpha
Helix 64	AH1	C	1553	1562	Right-handed alpha
Helix 65	AH2	D	4	13	Right-handed alpha
Helix 66	AH3	D	18	23	Right-handed alpha

There are 16 sheets in PDB entry 8XJZ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	171	172	first strand
Strand 2	A	119	121	parallel
Strand 3	A	201	203	parallel
Strand 4	A	248	252	anti-parallel
Strand 5	A	8	13	anti-parallel
Strand 6	A	265	273	anti-parallel
Strand 7	A	424	431	anti-parallel
Strand 8	A	415	418	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	38	39	first strand
Strand 2	A	63	64	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	72	73	first strand
Strand 2	A	873	874	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	447	453	first strand
Strand 2	A	494	500	anti-parallel
Strand 3	A	519	521	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	661	665	first strand
Strand 2	A	690	695	anti-parallel
Strand 3	A	681	687	anti-parallel
Strand 4	A	779	780	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	796	797	first strand
Strand 2	A	819	820	parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	171	173	first strand
Strand 2	B	118	121	parallel
Strand 3	B	200	201	parallel
Strand 4	B	244	252	anti-parallel
Strand 5	B	204	206	anti-parallel

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There are 11 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	171	173	first strand
Strand 2	B	118	121	parallel
Strand 3	B	200	201	parallel
Strand 4	B	244	252	anti-parallel
Strand 5	B	8	14	anti-parallel
Strand 6	B	265	271	anti-parallel
Strand 7	B	425	431	anti-parallel
Strand 8	B	413	417	anti-parallel
Strand 9	B	310	312	parallel
Strand 10	B	342	345	parallel
Strand 11	B	395	397	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	38	39	first strand
Strand 2	B	63	64	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	60	61	first strand
Strand 2	B	215	216	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	72	73	first strand
Strand 2	B	873	874	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	374	375	first strand
Strand 2	B	402	403	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	447	448	first strand
Strand 2	B	499	500	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	451	453	first strand
Strand 2	B	494	496	anti-parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	750	751	first strand
Strand 2	B	618	621	parallel
Strand 3	B	529	533	parallel
Strand 4	B	796	799	parallel
Strand 5	B	819	820	parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	663	665	first strand
Strand 2	B	690	694	anti-parallel
Strand 3	B	681	687	anti-parallel
Strand 4	B	779	780	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8XJZ

Analysis of interatomic Contacts of Structural Units in PDB entry:
8XJZ