Analysis of interatomic Contacts of Structural Units in PDB entry:
8XL9

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8XL9 entry

There are 4 chains in PDB entry 8XL9 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASN 495	ILE 1177
B	ASN 495	ILE 1177
C	ASN 495	ILE 1177
D	ASN 495	ILE 1177

There are112 helices in PDB entry 8XL9. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	496	511	Right-handed alpha
Helix 2	AA2	A	540	559	Right-handed alpha
Helix 3	AA3	A	571	578	Right-handed alpha
Helix 4	AA4	A	583	589	Right-handed alpha
Helix 5	AA5	A	590	598	Right-handed alpha
Helix 6	AA6	A	610	618	Right-handed alpha
Helix 7	AA7	A	622	634	Right-handed alpha
Helix 8	AA8	A	655	670	Right-handed alpha
Helix 9	AA9	A	682	696	Right-handed alpha
Helix 10	AB1	A	719	733	Right-handed alpha
Helix 11	AB2	A	748	763	Right-handed alpha
Helix 12	AB3	A	778	790	Right-handed alpha
Helix 13	AB4	A	798	802	Right-handed 310
Helix 14	AB5	A	809	816	Right-handed alpha
Helix 15	AB6	A	827	843	Right-handed alpha
Helix 16	AB7	A	844	853	Right-handed 310
Helix 17	AB8	A	860	865	Right-handed alpha
Helix 18	AB9	A	867	880	Right-handed alpha
Helix 19	AC1	A	886	901	Right-handed alpha
Helix 20	AC2	A	908	924	Right-handed alpha
Helix 21	AC3	A	927	934	Right-handed alpha
Helix 22	AC4	A	941	950	Right-handed alpha
Helix 23	AC5	A	960	968	Right-handed alpha
Helix 24	AC6	A	986	996	Right-handed alpha
Helix 25	AC7	A	1003	1013	Right-handed alpha
Helix 26	AC8	A	1013	1027	Right-handed alpha
Helix 27	AC9	A	1029	1033	Right-handed 310
Helix 28	AD1	A	1034	1041	Right-handed alpha
Helix 29	AD2	B	496	511	Right-handed alpha
Helix 30	AD3	B	540	559	Right-handed alpha
Helix 31	AD4	B	571	578	Right-handed alpha
Helix 32	AD5	B	583	589	Right-handed alpha
Helix 33	AD6	B	590	598	Right-handed alpha
Helix 34	AD7	B	610	618	Right-handed alpha
Helix 35	AD8	B	622	634	Right-handed alpha
Helix 36	AD9	B	655	670	Right-handed alpha
Helix 37	AE1	B	682	696	Right-handed alpha
Helix 38	AE2	B	719	733	Right-handed alpha
Helix 39	AE3	B	748	763	Right-handed alpha
Helix 40	AE4	B	778	790	Right-handed alpha
Helix 41	AE5	B	798	802	Right-handed 310
Helix 42	AE6	B	809	816	Right-handed alpha
Helix 43	AE7	B	827	843	Right-handed alpha
Helix 44	AE8	B	844	853	Right-handed 310
Helix 45	AE9	B	860	865	Right-handed alpha
Helix 46	AF1	B	867	880	Right-handed alpha
Helix 47	AF2	B	886	901	Right-handed alpha
Helix 48	AF3	B	908	924	Right-handed alpha
Helix 49	AF4	B	927	934	Right-handed alpha
Helix 50	AF5	B	941	950	Right-handed alpha
Helix 51	AF6	B	960	968	Right-handed alpha
Helix 52	AF7	B	986	996	Right-handed alpha
Helix 53	AF8	B	1003	1013	Right-handed alpha
Helix 54	AF9	B	1013	1027	Right-handed alpha
Helix 55	AG1	B	1029	1033	Right-handed 310
Helix 56	AG2	B	1034	1041	Right-handed alpha
Helix 57	AG3	C	496	511	Right-handed alpha
Helix 58	AG4	C	540	559	Right-handed alpha
Helix 59	AG5	C	571	578	Right-handed alpha
Helix 60	AG6	C	583	589	Right-handed alpha
Helix 61	AG7	C	590	598	Right-handed alpha
Helix 62	AG8	C	610	618	Right-handed alpha
Helix 63	AG9	C	622	634	Right-handed alpha
Helix 64	AH1	C	655	670	Right-handed alpha
Helix 65	AH2	C	682	696	Right-handed alpha
Helix 66	AH3	C	719	733	Right-handed alpha
Helix 67	AH4	C	748	763	Right-handed alpha
Helix 68	AH5	C	778	790	Right-handed alpha
Helix 69	AH6	C	798	802	Right-handed 310
Helix 70	AH7	C	809	816	Right-handed alpha
Helix 71	AH8	C	827	843	Right-handed alpha
Helix 72	AH9	C	844	853	Right-handed 310
Helix 73	AI1	C	860	865	Right-handed alpha
Helix 74	AI2	C	867	880	Right-handed alpha
Helix 75	AI3	C	886	901	Right-handed alpha
Helix 76	AI4	C	908	924	Right-handed alpha
Helix 77	AI5	C	927	934	Right-handed alpha
Helix 78	AI6	C	941	950	Right-handed alpha
Helix 79	AI7	C	960	968	Right-handed alpha
Helix 80	AI8	C	986	996	Right-handed alpha
Helix 81	AI9	C	1003	1013	Right-handed alpha
Helix 82	AJ1	C	1013	1027	Right-handed alpha
Helix 83	AJ2	C	1029	1033	Right-handed 310
Helix 84	AJ3	C	1034	1041	Right-handed alpha
Helix 85	AJ4	D	496	511	Right-handed alpha
Helix 86	AJ5	D	540	559	Right-handed alpha
Helix 87	AJ6	D	571	578	Right-handed alpha
Helix 88	AJ7	D	583	589	Right-handed alpha
Helix 89	AJ8	D	590	598	Right-handed alpha
Helix 90	AJ9	D	610	618	Right-handed alpha
Helix 91	AK1	D	622	634	Right-handed alpha
Helix 92	AK2	D	655	670	Right-handed alpha
Helix 93	AK3	D	682	696	Right-handed alpha
Helix 94	AK4	D	719	733	Right-handed alpha
Helix 95	AK5	D	748	763	Right-handed alpha
Helix 96	AK6	D	778	790	Right-handed alpha
Helix 97	AK7	D	798	802	Right-handed 310
Helix 98	AK8	D	809	816	Right-handed alpha
Helix 99	AK9	D	827	843	Right-handed alpha
Helix 100	AL1	D	844	853	Right-handed 310
Helix 101	AL2	D	860	865	Right-handed alpha
Helix 102	AL3	D	867	880	Right-handed alpha
Helix 103	AL4	D	886	901	Right-handed alpha
Helix 104	AL5	D	908	924	Right-handed alpha
Helix 105	AL6	D	927	934	Right-handed alpha
Helix 106	AL7	D	941	950	Right-handed alpha
Helix 107	AL8	D	960	968	Right-handed alpha
Helix 108	AL9	D	986	996	Right-handed alpha
Helix 109	AM1	D	1003	1013	Right-handed alpha
Helix 110	AM2	D	1013	1027	Right-handed alpha
Helix 111	AM3	D	1029	1033	Right-handed 310
Helix 112	AM4	D	1034	1041	Right-handed alpha

There are 20 sheets in PDB entry 8XL9. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	564	567	first strand
Strand 2	A	604	608	parallel
Strand 3	A	639	644	parallel
Strand 4	A	673	677	parallel
Strand 5	A	699	705	parallel
Strand 6	A	737	742	parallel
Strand 7	A	768	772	parallel
Strand 8	A	793	796	parallel
Strand 9	A	564	567	parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1048	1051	first strand
Strand 2	A	1057	1065	anti-parallel
Strand 3	A	1073	1080	anti-parallel
Strand 4	A	1083	1090	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1111	1113	first strand
Strand 2	A	1173	1176	anti-parallel
Strand 3	A	1159	1160	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1119	1123	first strand
Strand 2	A	1136	1142	anti-parallel
Strand 3	A	1145	1150	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1130	1131	first strand
Strand 2	A	1155	1156	anti-parallel

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There are 9 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	564	567	first strand
Strand 2	B	604	608	parallel
Strand 3	B	639	644	parallel
Strand 4	B	673	677	parallel
Strand 5	B	699	705	parallel
Strand 6	B	737	742	parallel
Strand 7	B	768	772	parallel
Strand 8	B	793	796	parallel
Strand 9	B	564	567	parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1048	1051	first strand
Strand 2	B	1057	1065	anti-parallel
Strand 3	B	1073	1080	anti-parallel
Strand 4	B	1083	1090	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1111	1113	first strand
Strand 2	B	1173	1176	anti-parallel
Strand 3	B	1159	1160	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1119	1123	first strand
Strand 2	B	1136	1142	anti-parallel
Strand 3	B	1145	1150	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1130	1131	first strand
Strand 2	B	1155	1156	anti-parallel

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There are 9 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	564	567	first strand
Strand 2	C	604	608	parallel
Strand 3	C	639	644	parallel
Strand 4	C	673	677	parallel
Strand 5	C	699	705	parallel
Strand 6	C	737	742	parallel
Strand 7	C	768	772	parallel
Strand 8	C	793	796	parallel
Strand 9	C	564	567	parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1048	1051	first strand
Strand 2	C	1057	1065	anti-parallel
Strand 3	C	1073	1080	anti-parallel
Strand 4	C	1083	1090	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1111	1113	first strand
Strand 2	C	1173	1176	anti-parallel
Strand 3	C	1159	1160	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1119	1123	first strand
Strand 2	C	1136	1142	anti-parallel
Strand 3	C	1145	1150	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1130	1131	first strand
Strand 2	C	1155	1156	anti-parallel

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There are 9 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	564	567	first strand
Strand 2	D	604	608	parallel
Strand 3	D	639	644	parallel
Strand 4	D	673	677	parallel
Strand 5	D	699	705	parallel
Strand 6	D	737	742	parallel
Strand 7	D	768	772	parallel
Strand 8	D	793	796	parallel
Strand 9	D	564	567	parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1048	1051	first strand
Strand 2	D	1057	1065	anti-parallel
Strand 3	D	1073	1080	anti-parallel
Strand 4	D	1083	1090	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1111	1113	first strand
Strand 2	D	1173	1176	anti-parallel
Strand 3	D	1159	1160	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1119	1123	first strand
Strand 2	D	1136	1142	anti-parallel
Strand 3	D	1145	1150	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1130	1131	first strand
Strand 2	D	1155	1156	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8XL9

Analysis of interatomic Contacts of Structural Units in PDB entry:
8XL9