Analysis of interatomic Contacts of Structural Units in PDB entry:
8XLI


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8XLI entry

There are 16 chains in PDB entry 8XLI (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
a
 LEU 4ILE 831
b
 THR 2GLY 204
c
 ILE 254ASP 457
d
 SER 2PHE 351
e
 ALA 3LEU 79
f
 CYS 6GLU 94
g
 ASN 6LYS 155
h
 ASN 6LYS 155
i
 ASN 6LYS 155
j
 ASN 6LYS 155
k
 ASN 6LYS 155
l
 ASN 6LYS 155
m
 ASN 6LYS 155
n
 ASN 6LYS 155
o
 ASN 6LYS 155
p
 PRO 292TYR 340
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are116 helices in PDB entry 8XLI. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
a
20 33Right-handed alpha
Helix 2
AA2
a
51 76Right-handed alpha
Helix 3
AA3
a
91 143Right-handed alpha
Helix 4
AA4
a
179 188Right-handed alpha
Helix 5
AA5
a
226 241Right-handed alpha
Helix 6
AA6
a
251 310Right-handed alpha
Helix 7
AA7
a
329 343Right-handed alpha
Helix 8
AA8
a
371 379Right-handed alpha
Helix 9
AA9
a
385 389Right-handed 310
Helix 10
AB1
a
391 396Right-handed alpha
Helix 11
AB2
a
410 426Right-handed alpha
Helix 12
AB3
a
426 433Right-handed alpha
Helix 13
AB4
a
437 465Right-handed alpha
Helix 14
AB5
a
466 470Right-handed 310
Helix 15
AB6
a
481 487Right-handed alpha
Helix 16
AB7
a
520 526Right-handed alpha
Helix 17
AB8
a
528 563Right-handed alpha
Helix 18
AB9
a
565 572Right-handed alpha
Helix 19
AC1
a
573 597Right-handed alpha
Helix 20
AC2
a
599 603Right-handed 310
Helix 21
AC3
a
632 645Right-handed alpha
Helix 22
AC4
a
647 652Right-handed alpha
Helix 23
AC5
a
655 667Right-handed alpha
Helix 24
AC6
a
713 739Right-handed alpha
Helix 25
AC7
a
740 765Right-handed alpha
Helix 26
AC8
a
768 775Right-handed alpha
Helix 27
AC9
a
775 790Right-handed alpha
Helix 28
AD1
a
793 810Right-handed alpha
Helix 29
AD2
b
3 29Right-handed alpha
Helix 30
AD3
b
36 44Right-handed alpha
Helix 31
AD4
b
45 80Right-handed alpha
Helix 32
AD5
b
85 90Right-handed alpha
Helix 33
AD6
b
91 93Right-handed 310
Helix 34
AD7
b
94 113Right-handed alpha
Helix 35
AD8
b
127 167Right-handed alpha
Helix 36
AD9
b
172 177Right-handed alpha
Helix 37
AE1
b
177 198Right-handed alpha
Helix 38
AE2
c
285 290Right-handed alpha
Helix 39
AE3
c
422 448Right-handed alpha
Helix 40
AE4
d
8 12Right-handed 310
Helix 41
AE5
d
13 25Right-handed alpha
Helix 42
AE6
d
29 38Right-handed alpha
Helix 43
AE7
d
41 51Right-handed alpha
Helix 44
AE8
d
66 88Right-handed alpha
Helix 45
AE9
d
90 119Right-handed alpha
Helix 46
AF1
d
145 152Right-handed alpha
Helix 47
AF2
d
160 165Right-handed alpha
Helix 48
AF3
d
179 200Right-handed alpha
Helix 49
AF4
d
202 229Right-handed alpha
Helix 50
AF5
d
233 241Right-handed alpha
Helix 51
AF6
d
251 258Right-handed alpha
Helix 52
AF7
d
260 269Right-handed alpha
Helix 53
AF8
d
271 281Right-handed alpha
Helix 54
AF9
d
289 305Right-handed alpha
Helix 55
AG1
d
306 308Right-handed 310
Helix 56
AG2
d
312 338Right-handed alpha
Helix 57
AG3
d
343 347Right-handed 310
Helix 58
AG4
e
6 22Right-handed alpha
Helix 59
AG5
e
34 60Right-handed alpha
Helix 60
AG6
e
72 77Right-handed alpha
Helix 61
AG7
f
8 36Right-handed alpha
Helix 62
AG8
f
47 51Right-handed 310
Helix 63
AG9
f
54 94Right-handed alpha
Helix 64
AH1
g
11 45Right-handed alpha
Helix 65
AH2
g
46 47Right-handed 310
Helix 66
AH3
g
48 55Right-handed 310
Helix 67
AH4
g
56 79Right-handed alpha
Helix 68
AH5
g
87 124Right-handed alpha
Helix 69
AH6
g
127 153Right-handed alpha
Helix 70
AH7
h
11 45Right-handed alpha
Helix 71
AH8
h
48 52Right-handed 310
Helix 72
AH9
h
53 55Right-handed 310
Helix 73
AI1
h
56 78Right-handed alpha
Helix 74
AI2
h
87 124Right-handed alpha
Helix 75
AI3
h
127 155Right-handed alpha
Helix 76
AI4
i
8 10Right-handed 310
Helix 77
AI5
i
11 43Right-handed alpha
Helix 78
AI6
i
52 55Right-handed 310
Helix 79
AI7
i
56 80Right-handed alpha
Helix 80
AI8
i
86 122Right-handed alpha
Helix 81
AI9
i
123 125Right-handed 310
Helix 82
AJ1
i
126 154Right-handed alpha
Helix 83
AJ2
j
10 46Right-handed alpha
Helix 84
AJ3
j
48 55Right-handed 310
Helix 85
AJ4
j
56 80Right-handed alpha
Helix 86
AJ5
j
86 124Right-handed alpha
Helix 87
AJ6
j
126 154Right-handed alpha
Helix 88
AJ7
k
10 45Right-handed alpha
Helix 89
AJ8
k
46 47Right-handed 310
Helix 90
AJ9
k
48 52Right-handed 310
Helix 91
AK1
k
56 79Right-handed alpha
Helix 92
AK2
k
86 124Right-handed alpha
Helix 93
AK3
k
127 154Right-handed alpha
Helix 94
AK4
l
10 45Right-handed alpha
Helix 95
AK5
l
52 55Right-handed 310
Helix 96
AK6
l
56 80Right-handed alpha
Helix 97
AK7
l
86 124Right-handed alpha
Helix 98
AK8
l
127 154Right-handed alpha
Helix 99
AK9
m
10 46Right-handed alpha
Helix 100
AL1
m
47 55Right-handed 310
Helix 101
AL2
m
56 79Right-handed alpha
Helix 102
AL3
m
86 122Right-handed alpha
Helix 103
AL4
m
123 125Right-handed 310
Helix 104
AL5
m
126 154Right-handed alpha
Helix 105
AL6
n
10 45Right-handed alpha
Helix 106
AL7
n
49 53Right-handed 310
Helix 107
AL8
n
56 79Right-handed alpha
Helix 108
AL9
n
87 124Right-handed alpha
Helix 109
AM1
n
127 154Right-handed alpha
Helix 110
AM2
o
11 46Right-handed alpha
Helix 111
AM3
o
47 55Right-handed 310
Helix 112
AM4
o
56 80Right-handed alpha
Helix 113
AM5
o
87 124Right-handed alpha
Helix 114
AM6
o
126 155Right-handed alpha
Helix 115
AM7
p
302 330Right-handed alpha
Helix 116
AM8
p
336 340Right-handed 310
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There are 6 sheets in PDB entry 8XLI. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
a
311 312first strand
Strand 2
a
319 324anti-parallel
Strand 3
a
12 16anti-parallel
Strand 4
a
350 353anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
a
217 223first strand
Strand 2
a
170 176anti-parallel
Strand 3
a
243 245anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
c
258 260first strand
Strand 2
c
267 270anti-parallel
Strand 3
c
392 402anti-parallel
Strand 4
c
275 278anti-parallel
Strand 5
c
282 284anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
c
258 260first strand
Strand 2
c
267 270anti-parallel
Strand 3
c
392 402anti-parallel
Strand 4
c
369 375anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
c
301 302first strand
Strand 2
c
306 316anti-parallel
Strand 3
c
319 332anti-parallel
Strand 4
c
337 349anti-parallel
Strand 5
c
362 364anti-parallel
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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
c
301 302first strand
Strand 2
c
306 316anti-parallel
Strand 3
c
319 332anti-parallel
Strand 4
c
337 349anti-parallel
Strand 5
c
352 358anti-parallel
Strand 6
c
384 385anti-parallel
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