Analysis of interatomic Contacts of Structural Units in PDB entry:
8XLR


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8XLR entry

There are 2 chains in PDB entry 8XLR (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 47GLN 913
B
 ALA 47GLN 913
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 56 helices in PDB entry 8XLR. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
119 139Right-handed alpha
Helix 2
AA2
A
161 172Right-handed alpha
Helix 3
AA3
A
191 202Right-handed alpha
Helix 4
AA4
A
237 241Right-handed 310
Helix 5
AA5
A
242 257Right-handed alpha
Helix 6
AA6
A
266 275Right-handed alpha
Helix 7
AA7
A
296 305Right-handed alpha
Helix 8
AA8
A
316 324Right-handed alpha
Helix 9
AA9
A
325 341Right-handed alpha
Helix 10
AB1
A
341 359Right-handed alpha
Helix 11
AB2
A
363 371Right-handed alpha
Helix 12
AB3
A
394 402Right-handed alpha
Helix 13
AB4
A
403 405Right-handed 310
Helix 14
AB5
A
406 438Right-handed alpha
Helix 15
AB6
A
490 526Right-handed alpha
Helix 16
AB7
A
534 568Right-handed alpha
Helix 17
AB8
A
572 602Right-handed alpha
Helix 18
AB9
A
630 645Right-handed alpha
Helix 19
AC1
A
648 670Right-handed alpha
Helix 20
AC2
A
685 691Right-handed alpha
Helix 21
AC3
A
699 716Right-handed alpha
Helix 22
AC4
A
722 745Right-handed alpha
Helix 23
AC5
A
759 782Right-handed alpha
Helix 24
AC6
A
784 795Right-handed alpha
Helix 25
AC7
A
803 808Right-handed alpha
Helix 26
AC8
A
815 817Right-handed 310
Helix 27
AC9
A
854 886Right-handed alpha
Helix 28
AD1
A
890 913Right-handed alpha
Helix 29
AD2
B
119 139Right-handed alpha
Helix 30
AD3
B
161 172Right-handed alpha
Helix 31
AD4
B
191 202Right-handed alpha
Helix 32
AD5
B
237 241Right-handed 310
Helix 33
AD6
B
242 257Right-handed alpha
Helix 34
AD7
B
266 275Right-handed alpha
Helix 35
AD8
B
296 305Right-handed alpha
Helix 36
AD9
B
316 324Right-handed alpha
Helix 37
AE1
B
325 341Right-handed alpha
Helix 38
AE2
B
341 359Right-handed alpha
Helix 39
AE3
B
363 371Right-handed alpha
Helix 40
AE4
B
394 402Right-handed alpha
Helix 41
AE5
B
403 405Right-handed 310
Helix 42
AE6
B
406 438Right-handed alpha
Helix 43
AE7
B
490 526Right-handed alpha
Helix 44
AE8
B
534 568Right-handed alpha
Helix 45
AE9
B
572 602Right-handed alpha
Helix 46
AF1
B
630 645Right-handed alpha
Helix 47
AF2
B
648 670Right-handed alpha
Helix 48
AF3
B
685 691Right-handed alpha
Helix 49
AF4
B
699 716Right-handed alpha
Helix 50
AF5
B
722 745Right-handed alpha
Helix 51
AF6
B
759 782Right-handed alpha
Helix 52
AF7
B
784 795Right-handed alpha
Helix 53
AF8
B
803 808Right-handed alpha
Helix 54
AF9
B
815 817Right-handed 310
Helix 55
AG1
B
854 886Right-handed alpha
Helix 56
AG2
B
890 913Right-handed alpha
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There are 12 sheets in PDB entry 8XLR. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
141 145first strand
Strand 2
A
154 159anti-parallel
Strand 3
A
64 68anti-parallel
Strand 4
A
277 281anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
175 183first strand
Strand 2
A
217 223anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
377 378first strand
Strand 2
A
389 390anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
608 609first strand
Strand 2
A
612 613anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
615 616first strand
Strand 2
A
620 621anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
809 813first strand
Strand 2
A
835 839anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
141 145first strand
Strand 2
B
154 159anti-parallel
Strand 3
B
64 68anti-parallel
Strand 4
B
277 281anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
175 183first strand
Strand 2
B
217 223anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
377 378first strand
Strand 2
B
389 390anti-parallel
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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
608 609first strand
Strand 2
B
612 613anti-parallel
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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
615 616first strand
Strand 2
B
620 621anti-parallel
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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
809 813first strand
Strand 2
B
835 839anti-parallel
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