Analysis of interatomic Contacts of Structural Units in PDB entry:
8XLS

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8XLS entry

There are 17 chains in PDB entry 8XLS (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASN 12	THR 752
B	ALA 2	PHE 732
C	SER 2	TYR 81
D	PRO 8	SER 139
E	ILE 2	LYS 62
F	GLU 25	ARG 185
I	MET 1	ALA 36
J	MET 1	PHE 41
L	ALA 2	LEU 147
M	MET 1	GLN 30
W	VAL 47	LEU 178
u	UNK 34	UNK 117
1	SER 37	PHE 221
2	GLU 31	SER 197
3	TRP 32	VAL 195
4	ASP 33	PHE 199
5	TYR 30	ALA 194

There are152 helices in PDB entry 8XLS. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	27	31	Right-handed 310
Helix 2	AA2	A	38	42	Right-handed 310
Helix 3	AA3	A	45	55	Right-handed alpha
Helix 4	AA4	A	58	63	Right-handed alpha
Helix 5	AA5	A	65	98	Right-handed alpha
Helix 6	AA6	A	100	107	Right-handed alpha
Helix 7	AA7	A	123	128	Right-handed 310
Helix 8	AA8	A	143	152	Right-handed alpha
Helix 9	AA9	A	155	183	Right-handed alpha
Helix 10	AB1	A	187	192	Right-handed alpha
Helix 11	AB2	A	193	204	Right-handed alpha
Helix 12	AB3	A	204	220	Right-handed alpha
Helix 13	AB4	A	220	230	Right-handed alpha
Helix 14	AB5	A	239	246	Right-handed alpha
Helix 15	AB6	A	246	254	Right-handed alpha
Helix 16	AB7	A	255	259	Right-handed 310
Helix 17	AB8	A	261	267	Right-handed alpha
Helix 18	AB9	A	268	275	Right-handed 310
Helix 19	AC1	A	290	309	Right-handed alpha
Helix 20	AC2	A	321	329	Right-handed alpha
Helix 21	AC3	A	340	348	Right-handed alpha
Helix 22	AC4	A	348	374	Right-handed alpha
Helix 23	AC5	A	383	416	Right-handed alpha
Helix 24	AC6	A	425	433	Right-handed alpha
Helix 25	AC7	A	433	465	Right-handed alpha
Helix 26	AC8	A	467	471	Right-handed 310
Helix 27	AC9	A	481	494	Right-handed alpha
Helix 28	AD1	A	495	497	Right-handed 310
Helix 29	AD2	A	507	511	Right-handed 310
Helix 30	AD3	A	529	556	Right-handed alpha
Helix 31	AD4	A	565	570	Right-handed alpha
Helix 32	AD5	A	587	618	Right-handed alpha
Helix 33	AD6	A	635	640	Right-handed alpha
Helix 34	AD7	A	642	650	Right-handed alpha
Helix 35	AD8	A	650	655	Right-handed alpha
Helix 36	AD9	A	655	660	Right-handed alpha
Helix 37	AE1	A	666	689	Right-handed alpha
Helix 38	AE2	A	690	708	Right-handed alpha
Helix 39	AE3	A	720	752	Right-handed alpha
Helix 40	AE4	B	9	14	Right-handed alpha
Helix 41	AE5	B	18	28	Right-handed alpha
Helix 42	AE6	B	30	34	Right-handed 310
Helix 43	AE7	B	38	72	Right-handed alpha
Helix 44	AE8	B	73	80	Right-handed alpha
Helix 45	AE9	B	81	84	Right-handed 310
Helix 46	AF1	B	97	105	Right-handed alpha
Helix 47	AF2	B	118	126	Right-handed alpha
Helix 48	AF3	B	130	155	Right-handed alpha
Helix 49	AF4	B	163	168	Right-handed alpha
Helix 50	AF5	B	169	180	Right-handed alpha
Helix 51	AF6	B	182	196	Right-handed alpha
Helix 52	AF7	B	196	202	Right-handed alpha
Helix 53	AF8	B	210	214	Right-handed 310
Helix 54	AF9	B	221	227	Right-handed alpha
Helix 55	AG1	B	228	233	Right-handed 310
Helix 56	AG2	B	268	287	Right-handed alpha
Helix 57	AG3	B	299	307	Right-handed alpha
Helix 58	AG4	B	320	328	Right-handed alpha
Helix 59	AG5	B	328	354	Right-handed alpha
Helix 60	AG6	B	359	362	Right-handed 310
Helix 61	AG7	B	363	396	Right-handed alpha
Helix 62	AG8	B	405	413	Right-handed alpha
Helix 63	AG9	B	413	445	Right-handed alpha
Helix 64	AH1	B	447	451	Right-handed 310
Helix 65	AH2	B	456	466	Right-handed alpha
Helix 66	AH3	B	475	479	Right-handed 310
Helix 67	AH4	B	482	489	Right-handed alpha
Helix 68	AH5	B	492	501	Right-handed alpha
Helix 69	AH6	B	512	539	Right-handed alpha
Helix 70	AH7	B	548	553	Right-handed 310
Helix 71	AH8	B	570	602	Right-handed alpha
Helix 72	AH9	B	604	612	Right-handed alpha
Helix 73	AI1	B	614	622	Right-handed alpha
Helix 74	AI2	B	622	627	Right-handed alpha
Helix 75	AI3	B	627	632	Right-handed alpha
Helix 76	AI4	B	642	665	Right-handed alpha
Helix 77	AI5	B	666	683	Right-handed alpha
Helix 78	AI6	B	700	732	Right-handed alpha
Helix 79	AI7	C	15	21	Right-handed alpha
Helix 80	AI8	C	44	48	Right-handed 310
Helix 81	AI9	C	52	58	Right-handed alpha
Helix 82	AJ1	D	20	26	Right-handed alpha
Helix 83	AJ2	D	62	75	Right-handed alpha
Helix 84	AJ3	D	119	123	Right-handed 310
Helix 85	AJ4	D	125	130	Right-handed 310
Helix 86	AJ5	D	135	139	Right-handed 310
Helix 87	AJ6	E	54	56	Right-handed 310
Helix 88	AJ7	F	25	29	Right-handed 310
Helix 89	AJ8	F	35	54	Right-handed alpha
Helix 90	AJ9	F	60	83	Right-handed alpha
Helix 91	AK1	F	100	104	Right-handed 310
Helix 92	AK2	F	107	133	Right-handed alpha
Helix 93	AK3	F	139	144	Right-handed alpha
Helix 94	AK4	F	146	155	Right-handed alpha
Helix 95	AK5	F	156	158	Right-handed 310
Helix 96	AK6	F	159	170	Right-handed alpha
Helix 97	AK7	F	176	180	Right-handed 310
Helix 98	AK8	I	2	4	Right-handed 310
Helix 99	AK9	I	5	16	Right-handed alpha
Helix 100	AL1	I	16	32	Right-handed alpha
Helix 101	AL2	J	2	9	Right-handed alpha
Helix 102	AL3	J	10	33	Right-handed alpha
Helix 103	AL4	L	9	11	Right-handed 310
Helix 104	AL5	L	19	24	Right-handed alpha
Helix 105	AL6	L	24	34	Right-handed alpha
Helix 106	AL7	L	42	66	Right-handed alpha
Helix 107	AL8	L	73	102	Right-handed alpha
Helix 108	AL9	L	113	141	Right-handed alpha
Helix 109	AM1	M	3	30	Right-handed alpha
Helix 110	AM2	W	100	107	Right-handed 310
Helix 111	AM3	W	113	125	Right-handed alpha
Helix 112	AM4	W	125	137	Right-handed alpha
Helix 113	AM5	W	149	158	Right-handed alpha
Helix 114	AM6	W	159	166	Right-handed alpha
Helix 115	AM7	W	167	175	Right-handed alpha
Helix 116	AM8	u	42	45	Right-handed 310
Helix 117	AM9	u	46	51	Right-handed alpha
Helix 118	AN1	u	56	79	Right-handed alpha
Helix 119	AN2	u	93	100	Right-handed alpha
Helix 120	AN3	u	102	117	Right-handed alpha
Helix 121	AN4	1	38	50	Right-handed alpha
Helix 122	AN5	1	50	56	Right-handed alpha
Helix 123	AN6	1	61	88	Right-handed alpha
Helix 124	AN7	1	99	104	Right-handed alpha
Helix 125	AN8	1	116	139	Right-handed alpha
Helix 126	AN9	1	155	166	Right-handed alpha
Helix 127	AO1	1	179	205	Right-handed alpha
Helix 128	AO2	1	207	216	Right-handed alpha
Helix 129	AO3	2	59	64	Right-handed alpha
Helix 130	AO4	2	67	94	Right-handed alpha
Helix 131	AO5	2	100	104	Right-handed 310
Helix 132	AO6	2	106	115	Right-handed alpha
Helix 133	AO7	2	115	133	Right-handed alpha
Helix 134	AO8	2	133	138	Right-handed alpha
Helix 135	AO9	2	157	187	Right-handed alpha
Helix 136	AP1	3	57	87	Right-handed alpha
Helix 137	AP2	3	91	96	Right-handed 310
Helix 138	AP3	3	100	108	Right-handed alpha
Helix 139	AP4	3	109	133	Right-handed alpha
Helix 140	AP5	3	143	147	Right-handed 310
Helix 141	AP6	3	152	182	Right-handed alpha
Helix 142	AP7	4	56	86	Right-handed alpha
Helix 143	AP8	4	99	104	Right-handed 310
Helix 144	AP9	4	107	123	Right-handed alpha
Helix 145	AQ1	4	151	184	Right-handed alpha
Helix 146	AQ2	5	32	37	Right-handed 310
Helix 147	AQ3	5	52	56	Right-handed 310
Helix 148	AQ4	5	58	87	Right-handed alpha
Helix 149	AQ5	5	101	106	Right-handed alpha
Helix 150	AQ6	5	107	131	Right-handed alpha
Helix 151	AQ7	5	152	183	Right-handed alpha
Helix 152	AQ8	5	190	194	Right-handed 310

There are 14 sheets in PDB entry 8XLS. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	17	19	first strand
Strand 2	A	184	186	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	114	116	first strand
Strand 2	A	136	139	anti-parallel
Strand 3	A	129	130	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	515	517	first strand
Strand 2	A	520	523	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	620	622	first strand
Strand 2	A	628	630	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	87	90	first strand
Strand 2	B	112	114	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	634	635	first strand
Strand 2	B	638	639	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	65	68	first strand
Strand 2	C	4	8	anti-parallel
Strand 3	D	115	116	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	27	30	first strand
Strand 2	C	38	41	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	54	60	first strand
Strand 2	D	28	35	anti-parallel
Strand 3	D	82	86	anti-parallel
Strand 4	D	92	96	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	40	42	first strand
Strand 2	D	48	50	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	50	53	first strand
Strand 2	E	36	39	anti-parallel
Strand 3	E	21	27	anti-parallel
Strand 4	E	7	10	anti-parallel
Strand 5	E	58	60	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	30	31	first strand
Strand 2	F	86	87	anti-parallel
Strand 3	F	93	94	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	6	7	first strand
Strand 2	L	17	18	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	1	108	110	first strand
Strand 2	1	113	114	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8XLS

Analysis of interatomic Contacts of Structural Units in PDB entry:
8XLS