Analysis of interatomic Contacts of Structural Units in PDB entry:
8XM7

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8XM7 entry

There are 3 chains in PDB entry 8XM7 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	ASN 727
B	MET 1	GLU 1215
D	MET 1	MET 1

There are 93 helices in PDB entry 8XM7. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	29	41	Right-handed alpha
Helix 2	AA2	A	45	47	Right-handed 310
Helix 3	AA3	A	65	69	Right-handed 310
Helix 4	AA4	A	80	93	Right-handed alpha
Helix 5	AA5	A	96	111	Right-handed alpha
Helix 6	AA6	A	113	124	Right-handed alpha
Helix 7	AA7	A	125	135	Right-handed alpha
Helix 8	AA8	A	140	167	Right-handed alpha
Helix 9	AA9	A	177	189	Right-handed alpha
Helix 10	AB1	A	194	212	Right-handed alpha
Helix 11	AB2	A	212	221	Right-handed alpha
Helix 12	AB3	A	228	234	Right-handed alpha
Helix 13	AB4	A	236	254	Right-handed alpha
Helix 14	AB5	A	255	269	Right-handed alpha
Helix 15	AB6	A	270	279	Right-handed alpha
Helix 16	AB7	A	287	311	Right-handed alpha
Helix 17	AB8	A	317	333	Right-handed alpha
Helix 18	AB9	A	337	341	Right-handed 310
Helix 19	AC1	A	344	358	Right-handed alpha
Helix 20	AC2	A	366	371	Right-handed 310
Helix 21	AC3	A	377	390	Right-handed alpha
Helix 22	AC4	A	391	402	Right-handed alpha
Helix 23	AC5	A	412	429	Right-handed alpha
Helix 24	AC6	A	444	448	Right-handed 310
Helix 25	AC7	A	450	470	Right-handed alpha
Helix 26	AC8	A	476	493	Right-handed alpha
Helix 27	AC9	A	498	509	Right-handed alpha
Helix 28	AD1	A	514	527	Right-handed alpha
Helix 29	AD2	A	530	540	Right-handed alpha
Helix 30	AD3	A	541	559	Right-handed alpha
Helix 31	AD4	A	609	613	Right-handed 310
Helix 32	AD5	A	622	627	Right-handed alpha
Helix 33	AD6	A	634	638	Right-handed 310
Helix 34	AD7	A	658	673	Right-handed alpha
Helix 35	AD8	A	679	696	Right-handed alpha
Helix 36	AD9	A	697	702	Right-handed 310
Helix 37	AE1	B	85	104	Right-handed alpha
Helix 38	AE2	B	110	131	Right-handed alpha
Helix 39	AE3	B	137	159	Right-handed alpha
Helix 40	AE4	B	180	206	Right-handed alpha
Helix 41	AE5	B	209	219	Right-handed alpha
Helix 42	AE6	B	285	291	Right-handed alpha
Helix 43	AE7	B	329	335	Right-handed alpha
Helix 44	AE8	B	378	389	Right-handed alpha
Helix 45	AE9	B	409	416	Right-handed alpha
Helix 46	AF1	B	521	524	Right-handed 310
Helix 47	AF2	B	537	544	Right-handed alpha
Helix 48	AF3	B	583	588	Right-handed alpha
Helix 49	AF4	B	591	605	Right-handed alpha
Helix 50	AF5	B	634	642	Right-handed alpha
Helix 51	AF6	B	649	658	Right-handed alpha
Helix 52	AF7	B	661	667	Right-handed alpha
Helix 53	AF8	B	668	683	Right-handed alpha
Helix 54	AF9	B	686	706	Right-handed alpha
Helix 55	AG1	B	707	711	Right-handed 310
Helix 56	AG2	B	712	724	Right-handed alpha
Helix 57	AG3	B	728	743	Right-handed alpha
Helix 58	AG4	B	746	758	Right-handed alpha
Helix 59	AG5	B	759	778	Right-handed alpha
Helix 60	AG6	B	783	804	Right-handed alpha
Helix 61	AG7	B	805	820	Right-handed alpha
Helix 62	AG8	B	823	831	Right-handed alpha
Helix 63	AG9	B	832	846	Right-handed alpha
Helix 64	AH1	B	852	866	Right-handed alpha
Helix 65	AH2	B	874	891	Right-handed alpha
Helix 66	AH3	B	897	915	Right-handed alpha
Helix 67	AH4	B	916	919	Right-handed 310
Helix 68	AH5	B	921	943	Right-handed alpha
Helix 69	AH6	B	949	964	Right-handed alpha
Helix 70	AH7	B	965	970	Right-handed alpha
Helix 71	AH8	B	978	998	Right-handed alpha
Helix 72	AH9	B	1006	1033	Right-handed alpha
Helix 73	AI1	B	1034	1037	Right-handed 310
Helix 74	AI2	B	1042	1055	Right-handed alpha
Helix 75	AI3	B	1058	1063	Right-handed alpha
Helix 76	AI4	B	1065	1077	Right-handed alpha
Helix 77	AI5	B	1078	1095	Right-handed alpha
Helix 78	AI6	B	1096	1100	Right-handed 310
Helix 79	AI7	B	1101	1106	Right-handed alpha
Helix 80	AI8	B	1107	1114	Right-handed alpha
Helix 81	AI9	B	1118	1125	Right-handed alpha
Helix 82	AJ1	B	1125	1140	Right-handed alpha
Helix 83	AJ2	B	1144	1162	Right-handed alpha
Helix 84	AJ3	B	1165	1183	Right-handed alpha
Helix 85	AJ4	B	1185	1212	Right-handed alpha
Helix 86	AJ5	D	15	25	Right-handed alpha
Helix 87	AJ6	D	64	72	Right-handed alpha
Helix 88	AJ7	D	86	94	Right-handed alpha
Helix 89	AJ8	D	96	105	Right-handed alpha
Helix 90	AJ9	D	116	120	Right-handed 310
Helix 91	AK1	D	122	132	Right-handed alpha
Helix 92	AK2	D	138	149	Right-handed alpha
Helix 93	AK3	D	164	178	Right-handed alpha

There are 11 sheets in PDB entry 8XM7. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	17	25	first strand
Strand 2	A	7	14	anti-parallel
Strand 3	A	75	79	parallel
Strand 4	A	49	53	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	561	562	first strand
Strand 2	A	575	576	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	578	579	first strand
Strand 2	A	586	587	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	616	618	first strand
Strand 2	A	641	644	anti-parallel
Strand 3	A	652	655	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	13	14	first strand
Strand 2	B	34	40	anti-parallel
Strand 3	B	44	49	anti-parallel
Strand 4	B	56	60	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	339	347	first strand
Strand 2	B	398	407	anti-parallel
Strand 3	B	222	228	anti-parallel
Strand 4	B	278	284	anti-parallel
Strand 5	B	426	429	parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	252	253	first strand
Strand 2	B	238	247	anti-parallel
Strand 3	B	258	262	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	252	253	first strand
Strand 2	B	238	247	anti-parallel
Strand 3	B	295	303	anti-parallel
Strand 4	B	320	328	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	484	485	first strand
Strand 2	B	508	515	anti-parallel
Strand 3	B	444	452	anti-parallel
Strand 4	B	615	628	anti-parallel
Strand 5	B	565	572	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	495	497	first strand
Strand 2	B	466	473	anti-parallel
Strand 3	B	526	533	anti-parallel
Strand 4	B	546	553	anti-parallel

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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	37	46	first strand
Strand 2	D	49	58	anti-parallel
Strand 3	D	3	9	parallel
Strand 4	D	77	83	parallel
Strand 5	D	110	115	parallel
Strand 6	D	154	156	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8XM7

Analysis of interatomic Contacts of Structural Units in PDB entry:
8XM7