Analysis of interatomic Contacts of Structural Units in PDB entry:
8XMF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8XMF entry

There are 2 chains in PDB entry 8XMF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 LEU 11CYS 447
A
 LEU 11CYS 447
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 21 helices in PDB entry 8XMF. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
B
11 33Right-handed alpha
Helix 2
AA2
B
34 62Right-handed alpha
Helix 3
AA3
B
76 106Right-handed alpha
Helix 4
AA4
B
112 133Right-handed alpha
Helix 5
AA5
B
245 273Right-handed alpha
Helix 6
AA6
B
291 298Right-handed alpha
Helix 7
AA7
B
315 344Right-handed alpha
Helix 8
AA8
B
352 362Right-handed alpha
Helix 9
AA9
B
399 410Right-handed alpha
Helix 10
AB1
A
12 33Right-handed alpha
Helix 11
AB2
A
34 63Right-handed alpha
Helix 12
AB3
A
73 75Right-handed 310
Helix 13
AB4
A
76 106Right-handed alpha
Helix 14
AB5
A
112 133Right-handed alpha
Helix 15
AB6
A
245 273Right-handed alpha
Helix 16
AB7
A
291 298Right-handed alpha
Helix 17
AB8
A
315 344Right-handed alpha
Helix 18
AB9
A
352 362Right-handed alpha
Helix 19
AC1
A
392 394Right-handed 310
Helix 20
AC2
A
395 410Right-handed alpha
Helix 21
AC3
A
440 444Right-handed 310
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There are 3 sheets in PDB entry 8XMF. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
370 378first strand
Strand 2
B
381 388anti-parallel
Strand 3
B
417 419parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
366 376first strand
Strand 2
A
382 390anti-parallel
Strand 3
A
414 415parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
366 376first strand
Strand 2
A
382 390anti-parallel
Strand 3
A
418 421parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il