Analysis of interatomic Contacts of Structural Units in PDB entry:
8XMK

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8XMK entry

There are 3 chains in PDB entry 8XMK (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
D	SER 473	ASP 1030
E	SER 473	ASP 1030
F	SER 473	ASP 1030

There are 36 helices in PDB entry 8XMK. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	D	508	519	Right-handed alpha
Helix 2	AA2	D	553	557	Right-handed 310
Helix 3	AA3	D	568	572	Right-handed 310
Helix 4	AA4	D	613	624	Right-handed alpha
Helix 5	AA5	D	658	662	Right-handed 310
Helix 6	AA6	D	749	760	Right-handed alpha
Helix 7	AA7	D	809	813	Right-handed 310
Helix 8	AA8	D	856	867	Right-handed alpha
Helix 9	AA9	D	901	905	Right-handed 310
Helix 10	AB1	D	959	971	Right-handed alpha
Helix 11	AB2	D	1019	1023	Right-handed 310
Helix 12	AB3	E	473	477	Right-handed 310
Helix 13	AB4	E	503	507	Right-handed 310
Helix 14	AB5	E	508	519	Right-handed alpha
Helix 15	AB6	E	568	572	Right-handed 310
Helix 16	AB7	E	613	624	Right-handed alpha
Helix 17	AB8	E	749	760	Right-handed alpha
Helix 18	AB9	E	794	798	Right-handed 310
Helix 19	AC1	E	809	813	Right-handed 310
Helix 20	AC2	E	856	867	Right-handed alpha
Helix 21	AC3	E	901	905	Right-handed 310
Helix 22	AC4	E	959	971	Right-handed alpha
Helix 23	AC5	E	1004	1008	Right-handed 310
Helix 24	AC6	E	1019	1023	Right-handed 310
Helix 25	AC7	F	504	507	Right-handed 310
Helix 26	AC8	F	508	519	Right-handed alpha
Helix 27	AC9	F	553	557	Right-handed 310
Helix 28	AD1	F	568	572	Right-handed 310
Helix 29	AD2	F	613	624	Right-handed alpha
Helix 30	AD3	F	749	760	Right-handed alpha
Helix 31	AD4	F	809	813	Right-handed 310
Helix 32	AD5	F	856	867	Right-handed alpha
Helix 33	AD6	F	901	905	Right-handed 310
Helix 34	AD7	F	916	920	Right-handed 310
Helix 35	AD8	F	959	971	Right-handed alpha
Helix 36	AD9	F	1019	1023	Right-handed 310

There are 35 sheets in PDB entry 8XMK. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	476	481	first strand
Strand 2	D	488	495	anti-parallel
Strand 3	D	574	577	anti-parallel
Strand 4	D	524	528	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	476	481	first strand
Strand 2	D	488	495	anti-parallel
Strand 3	D	498	502	anti-parallel
Strand 4	D	539	541	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	543	545	first strand
Strand 2	D	559	561	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	583	586	first strand
Strand 2	D	593	600	anti-parallel
Strand 3	D	603	605	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	583	586	first strand
Strand 2	D	593	600	anti-parallel
Strand 3	D	679	682	anti-parallel
Strand 4	D	629	631	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	649	650	first strand
Strand 2	D	664	665	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	719	726	first strand
Strand 2	D	729	736	anti-parallel
Strand 3	D	739	742	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	719	726	first strand
Strand 2	D	729	736	anti-parallel
Strand 3	D	815	818	anti-parallel
Strand 4	D	765	769	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	823	827	first strand
Strand 2	D	836	843	anti-parallel
Strand 3	D	922	925	anti-parallel
Strand 4	D	873	876	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	823	827	first strand
Strand 2	D	836	843	anti-parallel
Strand 3	D	846	850	anti-parallel
Strand 4	D	888	890	parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	929	932	first strand
Strand 2	D	939	946	anti-parallel
Strand 3	D	949	953	anti-parallel
Strand 4	D	991	993	parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	929	932	first strand
Strand 2	D	939	946	anti-parallel
Strand 3	D	1025	1027	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	480	481	first strand
Strand 2	E	488	495	anti-parallel
Strand 3	E	498	501	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	480	481	first strand
Strand 2	E	488	495	anti-parallel
Strand 3	E	574	577	anti-parallel
Strand 4	E	524	528	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	583	586	first strand
Strand 2	E	593	600	anti-parallel
Strand 3	E	603	605	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	583	586	first strand
Strand 2	E	593	600	anti-parallel
Strand 3	E	679	682	anti-parallel
Strand 4	E	629	631	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	649	650	first strand
Strand 2	E	664	665	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	719	722	first strand
Strand 2	E	729	736	anti-parallel
Strand 3	E	739	742	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	719	722	first strand
Strand 2	E	729	736	anti-parallel
Strand 3	E	815	818	anti-parallel
Strand 4	E	765	769	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	823	827	first strand
Strand 2	E	836	843	anti-parallel
Strand 3	E	922	925	anti-parallel
Strand 4	E	873	876	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	823	827	first strand
Strand 2	E	836	843	anti-parallel
Strand 3	E	846	850	anti-parallel
Strand 4	E	888	890	parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	930	932	first strand
Strand 2	E	939	946	anti-parallel
Strand 3	E	1025	1028	anti-parallel
Strand 4	E	975	979	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	930	932	first strand
Strand 2	E	939	946	anti-parallel
Strand 3	E	949	953	anti-parallel
Strand 4	E	991	993	parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	476	481	first strand
Strand 2	F	488	495	anti-parallel
Strand 3	F	574	577	anti-parallel
Strand 4	F	524	528	anti-parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	476	481	first strand
Strand 2	F	488	495	anti-parallel
Strand 3	F	498	502	anti-parallel
Strand 4	F	540	541	parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	543	545	first strand
Strand 2	F	559	561	anti-parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	583	586	first strand
Strand 2	F	593	600	anti-parallel
Strand 3	F	679	682	anti-parallel
Strand 4	F	629	631	anti-parallel

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There are 4 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	583	586	first strand
Strand 2	F	593	600	anti-parallel
Strand 3	F	603	607	anti-parallel
Strand 4	F	645	646	parallel

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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	649	650	first strand
Strand 2	F	664	665	anti-parallel

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There are 3 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	719	722	first strand
Strand 2	F	729	736	anti-parallel
Strand 3	F	739	742	anti-parallel

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There are 4 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	719	722	first strand
Strand 2	F	729	736	anti-parallel
Strand 3	F	815	818	anti-parallel
Strand 4	F	765	769	anti-parallel

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There are 4 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	823	827	first strand
Strand 2	F	836	843	anti-parallel
Strand 3	F	922	925	anti-parallel
Strand 4	F	873	876	anti-parallel

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There are 4 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	823	827	first strand
Strand 2	F	836	843	anti-parallel
Strand 3	F	846	850	anti-parallel
Strand 4	F	888	890	parallel

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There are 4 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	929	932	first strand
Strand 2	F	939	946	anti-parallel
Strand 3	F	1025	1027	anti-parallel
Strand 4	F	977	979	anti-parallel

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There are 4 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	929	932	first strand
Strand 2	F	939	946	anti-parallel
Strand 3	F	949	953	anti-parallel
Strand 4	F	991	993	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8XMK

Analysis of interatomic Contacts of Structural Units in PDB entry:
8XMK