Analysis of interatomic Contacts of Structural Units in PDB entry:
8XMM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8XMM entry

There are 2 chains in PDB entry 8XMM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 114GLU 1768
B
 GLY 20ALA 192
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 59 helices in PDB entry 8XMM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
114 124Right-handed alpha
Helix 2
AA2
A
126 143Right-handed alpha
Helix 3
AA3
A
151 175Right-handed alpha
Helix 4
AA4
A
186 205Right-handed alpha
Helix 5
AA5
A
209 216Right-handed alpha
Helix 6
AA6
A
217 222Right-handed 310
Helix 7
AA7
A
223 228Right-handed alpha
Helix 8
AA8
A
228 245Right-handed alpha
Helix 9
AA9
A
245 267Right-handed alpha
Helix 10
AB1
A
269 271Right-handed 310
Helix 11
AB2
A
285 293Right-handed alpha
Helix 12
AB3
A
295 303Right-handed alpha
Helix 13
AB4
A
337 341Right-handed 310
Helix 14
AB5
A
346 360Right-handed alpha
Helix 15
AB6
A
362 374Right-handed alpha
Helix 16
AB7
A
375 377Right-handed 310
Helix 17
AB8
A
378 417Right-handed alpha
Helix 18
AB9
A
727 742Right-handed alpha
Helix 19
AC1
A
743 762Right-handed alpha
Helix 20
AC2
A
769 797Right-handed alpha
Helix 21
AC3
A
799 804Right-handed alpha
Helix 22
AC4
A
806 825Right-handed alpha
Helix 23
AC5
A
831 837Right-handed alpha
Helix 24
AC6
A
838 848Right-handed 310
Helix 25
AC7
A
849 862Right-handed alpha
Helix 26
AC8
A
862 889Right-handed alpha
Helix 27
AC9
A
890 895Right-handed alpha
Helix 28
AD1
A
896 900Right-handed 310
Helix 29
AD2
A
912 925Right-handed alpha
Helix 30
AD3
A
929 940Right-handed alpha
Helix 31
AD4
A
940 955Right-handed alpha
Helix 32
AD5
A
958 971Right-handed alpha
Helix 33
AD6
A
1176 1191Right-handed alpha
Helix 34
AD7
A
1191 1211Right-handed alpha
Helix 35
AD8
A
1219 1249Right-handed alpha
Helix 36
AD9
A
1249 1255Right-handed alpha
Helix 37
AE1
A
1256 1278Right-handed alpha
Helix 38
AE2
A
1283 1290Right-handed alpha
Helix 39
AE3
A
1291 1301Right-handed 310
Helix 40
AE4
A
1304 1316Right-handed alpha
Helix 41
AE5
A
1317 1344Right-handed alpha
Helix 42
AE6
A
1366 1377Right-handed alpha
Helix 43
AE7
A
1391 1405Right-handed alpha
Helix 44
AE8
A
1407 1416Right-handed alpha
Helix 45
AE9
A
1430 1432Right-handed 310
Helix 46
AF1
A
1433 1467Right-handed alpha
Helix 47
AF2
A
1475 1489Right-handed alpha
Helix 48
AF3
A
1504 1514Right-handed alpha
Helix 49
AF4
A
1514 1534Right-handed alpha
Helix 50
AF5
A
1540 1570Right-handed alpha
Helix 51
AF6
A
1576 1602Right-handed alpha
Helix 52
AF7
A
1605 1614Right-handed alpha
Helix 53
AF8
A
1616 1621Right-handed alpha
Helix 54
AF9
A
1622 1626Right-handed 310
Helix 55
AG1
A
1627 1666Right-handed alpha
Helix 56
AG2
A
1683 1696Right-handed alpha
Helix 57
AG3
A
1699 1709Right-handed alpha
Helix 58
AG4
A
1732 1768Right-handed alpha
Helix 59
AG5
B
153 192Right-handed alpha
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There are 4 sheets in PDB entry 8XMM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
273 276first strand
Strand 2
A
329 332anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1357 1358first strand
Strand 2
A
1349 1352anti-parallel
Strand 3
A
1380 1383anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
29 31first strand
Strand 2
B
133 147parallel
Strand 3
B
117 128anti-parallel
Strand 4
B
50 61anti-parallel
Strand 5
B
68 74anti-parallel
Strand 6
B
77 80anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
36 38first strand
Strand 2
B
106 108anti-parallel
Strand 3
B
90 92anti-parallel
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