Analysis of interatomic Contacts of Structural Units in PDB entry:
8XMO


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8XMO entry

There are 3 chains in PDB entry 8XMO (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
C
 MET 30MET 148
A
 GLY 8GLU 1768
B
 GLY 20ALA 192
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 67 helices in PDB entry 8XMO. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
C
104 108Right-handed 310
Helix 2
AA2
A
16 31Right-handed alpha
Helix 3
AA3
A
60 64Right-handed 310
Helix 4
AA4
A
67 71Right-handed 310
Helix 5
AA5
A
79 84Right-handed alpha
Helix 6
AA6
A
104 108Right-handed 310
Helix 7
AA7
A
113 125Right-handed alpha
Helix 8
AA8
A
125 144Right-handed alpha
Helix 9
AA9
A
149 175Right-handed alpha
Helix 10
AB1
A
187 206Right-handed alpha
Helix 11
AB2
A
214 219Right-handed alpha
Helix 12
AB3
A
220 222Right-handed 310
Helix 13
AB4
A
223 228Right-handed alpha
Helix 14
AB5
A
230 242Right-handed alpha
Helix 15
AB6
A
245 268Right-handed alpha
Helix 16
AB7
A
285 292Right-handed alpha
Helix 17
AB8
A
295 303Right-handed alpha
Helix 18
AB9
A
337 341Right-handed 310
Helix 19
AC1
A
346 359Right-handed alpha
Helix 20
AC2
A
362 374Right-handed alpha
Helix 21
AC3
A
375 377Right-handed 310
Helix 22
AC4
A
378 389Right-handed alpha
Helix 23
AC5
A
389 431Right-handed alpha
Helix 24
AC6
A
729 741Right-handed alpha
Helix 25
AC7
A
742 762Right-handed alpha
Helix 26
AC8
A
769 798Right-handed alpha
Helix 27
AC9
A
799 804Right-handed alpha
Helix 28
AD1
A
806 825Right-handed alpha
Helix 29
AD2
A
832 848Right-handed 310
Helix 30
AD3
A
849 864Right-handed alpha
Helix 31
AD4
A
867 889Right-handed alpha
Helix 32
AD5
A
890 895Right-handed alpha
Helix 33
AD6
A
912 926Right-handed alpha
Helix 34
AD7
A
929 940Right-handed alpha
Helix 35
AD8
A
940 972Right-handed alpha
Helix 36
AD9
A
986 1014Right-handed alpha
Helix 37
AE1
A
1176 1190Right-handed alpha
Helix 38
AE2
A
1191 1211Right-handed alpha
Helix 39
AE3
A
1213 1218Right-handed 310
Helix 40
AE4
A
1219 1255Right-handed alpha
Helix 41
AE5
A
1256 1279Right-handed alpha
Helix 42
AE6
A
1280 1282Right-handed 310
Helix 43
AE7
A
1283 1291Right-handed alpha
Helix 44
AE8
A
1292 1301Right-handed 310
Helix 45
AE9
A
1304 1317Right-handed alpha
Helix 46
AF1
A
1317 1344Right-handed alpha
Helix 47
AF2
A
1366 1377Right-handed alpha
Helix 48
AF3
A
1391 1404Right-handed alpha
Helix 49
AF4
A
1407 1416Right-handed alpha
Helix 50
AF5
A
1430 1432Right-handed 310
Helix 51
AF6
A
1433 1445Right-handed alpha
Helix 52
AF7
A
1445 1468Right-handed alpha
Helix 53
AF8
A
1475 1488Right-handed alpha
Helix 54
AF9
A
1489 1491Right-handed 310
Helix 55
AG1
A
1502 1513Right-handed alpha
Helix 56
AG2
A
1516 1534Right-handed alpha
Helix 57
AG3
A
1540 1569Right-handed alpha
Helix 58
AG4
A
1572 1575Right-handed 310
Helix 59
AG5
A
1576 1602Right-handed alpha
Helix 60
AG6
A
1605 1614Right-handed alpha
Helix 61
AG7
A
1617 1622Right-handed alpha
Helix 62
AG8
A
1622 1627Right-handed alpha
Helix 63
AG9
A
1629 1666Right-handed alpha
Helix 64
AH1
A
1683 1696Right-handed alpha
Helix 65
AH2
A
1699 1709Right-handed alpha
Helix 66
AH3
A
1732 1767Right-handed alpha
Helix 67
AH4
B
153 192Right-handed alpha
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There are 9 sheets in PDB entry 8XMO. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
31 33first strand
Strand 2
C
51 53anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
37 41first strand
Strand 2
C
138 147parallel
Strand 3
C
123 130anti-parallel
Strand 4
C
64 70anti-parallel
Strand 5
C
78 83anti-parallel
Strand 6
C
87 89anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
46 48first strand
Strand 2
C
112 114anti-parallel
Strand 3
C
99 101anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
74 75first strand
Strand 2
A
88 90anti-parallel
Strand 3
A
98 100anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
274 277first strand
Strand 2
A
328 331anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1357 1358first strand
Strand 2
A
1349 1352anti-parallel
Strand 3
A
1380 1383anti-parallel
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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
29 31first strand
Strand 2
B
138 147parallel
Strand 3
B
117 123anti-parallel
Strand 4
B
55 61anti-parallel
Strand 5
B
68 74anti-parallel
Strand 6
B
77 80anti-parallel
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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
36 38first strand
Strand 2
B
106 108anti-parallel
Strand 3
B
90 92anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
126 128first strand
Strand 2
B
133 135anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il