Analysis of interatomic Contacts of Structural Units in PDB entry:
8XMP

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8XMP entry

There are 6 chains in PDB entry 8XMP (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
2	VAL 48	GLU 346
E	LEU 264	ASP 1030
F	GLY 154	ASP 1030
D	GLY 154	ASP 1030
C	VAL 1	ARG 141
G	VAL 1	HIS 143

There are 74 helices in PDB entry 8XMP. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	2	141	146	Right-handed alpha
Helix 2	AA2	2	157	162	Right-handed alpha
Helix 3	AA3	2	246	255	Right-handed alpha
Helix 4	AA4	2	333	346	Right-handed alpha
Helix 5	AA5	E	296	308	Right-handed alpha
Helix 6	AA6	E	356	360	Right-handed 310
Helix 7	AA7	E	403	415	Right-handed alpha
Helix 8	AA8	E	448	452	Right-handed 310
Helix 9	AA9	E	474	476	Right-handed 310
Helix 10	AB1	E	503	507	Right-handed 310
Helix 11	AB2	E	508	519	Right-handed alpha
Helix 12	AB3	E	568	572	Right-handed 310
Helix 13	AB4	E	613	624	Right-handed alpha
Helix 14	AB5	E	749	760	Right-handed alpha
Helix 15	AB6	E	794	798	Right-handed 310
Helix 16	AB7	E	809	813	Right-handed 310
Helix 17	AB8	E	856	867	Right-handed alpha
Helix 18	AB9	E	901	905	Right-handed 310
Helix 19	AC1	E	959	971	Right-handed alpha
Helix 20	AC2	E	1004	1008	Right-handed 310
Helix 21	AC3	E	1019	1023	Right-handed 310
Helix 22	AC4	F	189	200	Right-handed alpha
Helix 23	AC5	F	249	253	Right-handed 310
Helix 24	AC6	F	296	308	Right-handed alpha
Helix 25	AC7	F	341	345	Right-handed 310
Helix 26	AC8	F	356	360	Right-handed 310
Helix 27	AC9	F	403	415	Right-handed alpha
Helix 28	AD1	F	504	507	Right-handed 310
Helix 29	AD2	F	508	519	Right-handed alpha
Helix 30	AD3	F	568	572	Right-handed 310
Helix 31	AD4	F	613	624	Right-handed alpha
Helix 32	AD5	F	749	760	Right-handed alpha
Helix 33	AD6	F	809	813	Right-handed 310
Helix 34	AD7	F	856	867	Right-handed alpha
Helix 35	AD8	F	901	905	Right-handed 310
Helix 36	AD9	F	916	920	Right-handed 310
Helix 37	AE1	F	959	971	Right-handed alpha
Helix 38	AE2	F	1019	1023	Right-handed 310
Helix 39	AE3	D	189	200	Right-handed alpha
Helix 40	AE4	D	234	238	Right-handed 310
Helix 41	AE5	D	259	263	Right-handed alpha
Helix 42	AE6	D	296	308	Right-handed alpha
Helix 43	AE7	D	356	360	Right-handed 310
Helix 44	AE8	D	403	415	Right-handed alpha
Helix 45	AE9	D	448	452	Right-handed 310
Helix 46	AF1	D	504	507	Right-handed 310
Helix 47	AF2	D	508	519	Right-handed alpha
Helix 48	AF3	D	553	557	Right-handed 310
Helix 49	AF4	D	568	572	Right-handed 310
Helix 50	AF5	D	613	624	Right-handed alpha
Helix 51	AF6	D	749	760	Right-handed alpha
Helix 52	AF7	D	794	798	Right-handed 310
Helix 53	AF8	D	809	813	Right-handed 310
Helix 54	AF9	D	856	868	Right-handed alpha
Helix 55	AG1	D	901	905	Right-handed 310
Helix 56	AG2	D	959	971	Right-handed alpha
Helix 57	AG3	D	1019	1023	Right-handed 310
Helix 58	AG4	C	3	18	Right-handed alpha
Helix 59	AG5	C	20	36	Right-handed alpha
Helix 60	AG6	C	37	43	Right-handed 310
Helix 61	AG7	C	52	72	Right-handed alpha
Helix 62	AG8	C	75	80	Right-handed alpha
Helix 63	AG9	C	80	90	Right-handed alpha
Helix 64	AH1	C	94	113	Right-handed alpha
Helix 65	AH2	C	118	138	Right-handed alpha
Helix 66	AH3	G	4	17	Right-handed alpha
Helix 67	AH4	G	19	35	Right-handed alpha
Helix 68	AH5	G	36	46	Right-handed 310
Helix 69	AH6	G	50	56	Right-handed alpha
Helix 70	AH7	G	57	77	Right-handed alpha
Helix 71	AH8	G	80	95	Right-handed alpha
Helix 72	AH9	G	99	119	Right-handed alpha
Helix 73	AI1	G	120	122	Right-handed 310
Helix 74	AI2	G	123	141	Right-handed alpha

There are 55 sheets in PDB entry 8XMP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7, AE8, AE9, AF1, AF2, AF3, AF4, AF5, AF6, AF7, AF8, AF9, AG1,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	2	56	57	first strand
Strand 2	2	87	88	anti-parallel

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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	2	170	172	first strand
Strand 2	2	163	166	anti-parallel
Strand 3	2	117	121	anti-parallel
Strand 4	2	127	132	anti-parallel
Strand 5	2	137	140	anti-parallel
Strand 6	2	189	193	anti-parallel
Strand 7	2	174	179	anti-parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	2	238	243	first strand
Strand 2	2	219	224	anti-parallel
Strand 3	2	299	304	anti-parallel
Strand 4	2	309	318	anti-parallel
Strand 5	2	327	332	anti-parallel
Strand 6	2	279	283	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	266	273	first strand
Strand 2	E	276	283	anti-parallel
Strand 3	E	362	366	anti-parallel
Strand 4	E	313	316	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	266	273	first strand
Strand 2	E	276	283	anti-parallel
Strand 3	E	286	289	anti-parallel
Strand 4	E	327	328	parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	371	377	first strand
Strand 2	E	383	390	anti-parallel
Strand 3	E	469	472	anti-parallel
Strand 4	E	419	421	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	396	397	first strand
Strand 2	E	436	439	parallel
Strand 3	E	455	457	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	477	481	first strand
Strand 2	E	488	495	anti-parallel
Strand 3	E	498	501	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	477	481	first strand
Strand 2	E	488	495	anti-parallel
Strand 3	E	574	577	anti-parallel
Strand 4	E	524	528	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	544	545	first strand
Strand 2	E	559	560	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	583	586	first strand
Strand 2	E	593	600	anti-parallel
Strand 3	E	603	605	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	583	586	first strand
Strand 2	E	593	600	anti-parallel
Strand 3	E	679	682	anti-parallel
Strand 4	E	629	631	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	649	650	first strand
Strand 2	E	664	665	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	719	722	first strand
Strand 2	E	729	736	anti-parallel
Strand 3	E	739	742	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	719	722	first strand
Strand 2	E	729	736	anti-parallel
Strand 3	E	815	818	anti-parallel
Strand 4	E	765	769	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	823	827	first strand
Strand 2	E	836	843	anti-parallel
Strand 3	E	922	925	anti-parallel
Strand 4	E	873	876	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	823	827	first strand
Strand 2	E	836	843	anti-parallel
Strand 3	E	846	850	anti-parallel
Strand 4	E	888	890	parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	930	932	first strand
Strand 2	E	939	946	anti-parallel
Strand 3	E	1025	1028	anti-parallel
Strand 4	E	975	977	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	930	932	first strand
Strand 2	E	939	946	anti-parallel
Strand 3	E	949	953	anti-parallel
Strand 4	E	991	993	parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	159	162	first strand
Strand 2	F	169	176	anti-parallel
Strand 3	F	179	182	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	159	162	first strand
Strand 2	F	169	176	anti-parallel
Strand 3	F	255	258	anti-parallel
Strand 4	F	205	209	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	265	269	first strand
Strand 2	F	276	283	anti-parallel
Strand 3	F	362	366	anti-parallel
Strand 4	F	313	316	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	265	269	first strand
Strand 2	F	276	283	anti-parallel
Strand 3	F	286	290	anti-parallel
Strand 4	F	328	330	parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	371	377	first strand
Strand 2	F	383	390	anti-parallel
Strand 3	F	469	472	anti-parallel
Strand 4	F	419	421	anti-parallel

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There are 5 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	371	377	first strand
Strand 2	F	383	390	anti-parallel
Strand 3	F	393	397	anti-parallel
Strand 4	F	436	439	parallel
Strand 5	F	455	457	anti-parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	477	481	first strand
Strand 2	F	488	495	anti-parallel
Strand 3	F	574	577	anti-parallel
Strand 4	F	524	528	anti-parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	477	481	first strand
Strand 2	F	488	495	anti-parallel
Strand 3	F	498	502	anti-parallel
Strand 4	F	540	541	parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	543	545	first strand
Strand 2	F	559	561	anti-parallel

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There are 4 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	583	586	first strand
Strand 2	F	593	600	anti-parallel
Strand 3	F	679	682	anti-parallel
Strand 4	F	629	631	anti-parallel

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There are 4 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	583	586	first strand
Strand 2	F	593	600	anti-parallel
Strand 3	F	603	607	anti-parallel
Strand 4	F	645	646	parallel

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There are 2 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	649	650	first strand
Strand 2	F	664	665	anti-parallel

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There are 4 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	719	722	first strand
Strand 2	F	729	736	anti-parallel
Strand 3	F	815	818	anti-parallel
Strand 4	F	765	769	anti-parallel

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There are 4 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	719	722	first strand
Strand 2	F	729	736	anti-parallel
Strand 3	F	739	746	anti-parallel
Strand 4	F	781	785	parallel

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There are 4 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	823	827	first strand
Strand 2	F	836	843	anti-parallel
Strand 3	F	922	925	anti-parallel
Strand 4	F	873	876	anti-parallel

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There are 4 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	823	827	first strand
Strand 2	F	836	843	anti-parallel
Strand 3	F	846	850	anti-parallel
Strand 4	F	888	890	parallel

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There are 4 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	929	932	first strand
Strand 2	F	939	946	anti-parallel
Strand 3	F	949	953	anti-parallel
Strand 4	F	991	993	parallel

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There are 3 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	929	932	first strand
Strand 2	F	939	946	anti-parallel
Strand 3	F	1025	1027	anti-parallel

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There are 3 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	159	162	first strand
Strand 2	D	169	176	anti-parallel
Strand 3	D	179	181	anti-parallel

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There are 4 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	159	162	first strand
Strand 2	D	169	176	anti-parallel
Strand 3	D	255	258	anti-parallel
Strand 4	D	205	209	anti-parallel

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There are 4 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	265	269	first strand
Strand 2	D	276	283	anti-parallel
Strand 3	D	362	366	anti-parallel
Strand 4	D	313	316	anti-parallel

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There are 4 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	265	269	first strand
Strand 2	D	276	283	anti-parallel
Strand 3	D	286	290	anti-parallel
Strand 4	D	327	330	parallel

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There are 4 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	371	380	first strand
Strand 2	D	383	390	anti-parallel
Strand 3	D	469	472	anti-parallel
Strand 4	D	419	421	anti-parallel

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There are 5 strands in AE7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	371	380	first strand
Strand 2	D	383	390	anti-parallel
Strand 3	D	393	397	anti-parallel
Strand 4	D	436	441	parallel
Strand 5	D	453	457	anti-parallel

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There are 4 strands in AE8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	476	481	first strand
Strand 2	D	488	495	anti-parallel
Strand 3	D	574	577	anti-parallel
Strand 4	D	524	528	anti-parallel

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There are 4 strands in AE9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	476	481	first strand
Strand 2	D	488	495	anti-parallel
Strand 3	D	498	502	anti-parallel
Strand 4	D	539	541	parallel

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There are 2 strands in AF1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	543	545	first strand
Strand 2	D	559	561	anti-parallel

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There are 4 strands in AF2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	583	586	first strand
Strand 2	D	593	600	anti-parallel
Strand 3	D	679	682	anti-parallel
Strand 4	D	629	631	anti-parallel

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There are 4 strands in AF3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	583	586	first strand
Strand 2	D	593	600	anti-parallel
Strand 3	D	603	607	anti-parallel
Strand 4	D	645	646	parallel

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There are 2 strands in AF4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	649	650	first strand
Strand 2	D	664	665	anti-parallel

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There are 3 strands in AF5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	719	722	first strand
Strand 2	D	729	736	anti-parallel
Strand 3	D	739	742	anti-parallel

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There are 4 strands in AF6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	719	722	first strand
Strand 2	D	729	736	anti-parallel
Strand 3	D	815	818	anti-parallel
Strand 4	D	765	769	anti-parallel

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There are 4 strands in AF7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	823	827	first strand
Strand 2	D	836	843	anti-parallel
Strand 3	D	922	925	anti-parallel
Strand 4	D	873	876	anti-parallel

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There are 4 strands in AF8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	823	827	first strand
Strand 2	D	836	843	anti-parallel
Strand 3	D	846	850	anti-parallel
Strand 4	D	888	890	parallel

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There are 4 strands in AF9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	929	932	first strand
Strand 2	D	939	946	anti-parallel
Strand 3	D	949	953	anti-parallel
Strand 4	D	991	993	parallel

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There are 3 strands in AG1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	929	932	first strand
Strand 2	D	939	946	anti-parallel
Strand 3	D	1025	1027	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8XMP

Analysis of interatomic Contacts of Structural Units in PDB entry:
8XMP