Analysis of interatomic Contacts of Structural Units in PDB entry:
8XMQ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8XMQ entry

There are 5 chains in PDB entry 8XMQ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
2	CYS 52	GLU 346
F	GLY 154	THR 849
D	GLY 154	ASP 1030
C	VAL 1	TYR 140
G	VAL 1	HIS 143

There are 46 helices in PDB entry 8XMQ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	2	141	146	Right-handed alpha
Helix 2	AA2	2	157	162	Right-handed alpha
Helix 3	AA3	2	246	255	Right-handed alpha
Helix 4	AA4	2	333	344	Right-handed alpha
Helix 5	AA5	F	189	200	Right-handed alpha
Helix 6	AA6	F	249	253	Right-handed 310
Helix 7	AA7	F	296	308	Right-handed alpha
Helix 8	AA8	F	356	360	Right-handed 310
Helix 9	AA9	F	403	415	Right-handed alpha
Helix 10	AB1	F	749	760	Right-handed alpha
Helix 11	AB2	F	809	813	Right-handed 310
Helix 12	AB3	D	189	200	Right-handed alpha
Helix 13	AB4	D	259	263	Right-handed alpha
Helix 14	AB5	D	296	308	Right-handed alpha
Helix 15	AB6	D	356	360	Right-handed 310
Helix 16	AB7	D	403	415	Right-handed alpha
Helix 17	AB8	D	448	452	Right-handed 310
Helix 18	AB9	D	504	507	Right-handed 310
Helix 19	AC1	D	508	519	Right-handed alpha
Helix 20	AC2	D	553	557	Right-handed 310
Helix 21	AC3	D	568	572	Right-handed 310
Helix 22	AC4	D	613	620	Right-handed alpha
Helix 23	AC5	D	622	624	Right-handed 310
Helix 24	AC6	D	856	868	Right-handed alpha
Helix 25	AC7	D	901	905	Right-handed 310
Helix 26	AC8	D	959	971	Right-handed alpha
Helix 27	AC9	D	1004	1008	Right-handed 310
Helix 28	AD1	D	1019	1023	Right-handed 310
Helix 29	AD2	C	3	18	Right-handed alpha
Helix 30	AD3	C	20	36	Right-handed alpha
Helix 31	AD4	C	37	43	Right-handed 310
Helix 32	AD5	C	52	72	Right-handed alpha
Helix 33	AD6	C	75	80	Right-handed alpha
Helix 34	AD7	C	80	90	Right-handed alpha
Helix 35	AD8	C	94	113	Right-handed alpha
Helix 36	AD9	C	118	138	Right-handed alpha
Helix 37	AE1	G	4	17	Right-handed alpha
Helix 38	AE2	G	19	35	Right-handed alpha
Helix 39	AE3	G	36	43	Right-handed 310
Helix 40	AE4	G	50	56	Right-handed alpha
Helix 41	AE5	G	57	77	Right-handed alpha
Helix 42	AE6	G	80	85	Right-handed alpha
Helix 43	AE7	G	85	95	Right-handed alpha
Helix 44	AE8	G	99	119	Right-handed alpha
Helix 45	AE9	G	120	122	Right-handed 310
Helix 46	AF1	G	123	141	Right-handed alpha

There are 27 sheets in PDB entry 8XMQ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	2	56	58	first strand
Strand 2	2	86	88	anti-parallel

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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	2	170	172	first strand
Strand 2	2	163	166	anti-parallel
Strand 3	2	117	121	anti-parallel
Strand 4	2	127	132	anti-parallel
Strand 5	2	137	140	anti-parallel
Strand 6	2	189	193	anti-parallel
Strand 7	2	174	179	anti-parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	2	238	243	first strand
Strand 2	2	219	224	anti-parallel
Strand 3	2	299	304	anti-parallel
Strand 4	2	309	318	anti-parallel
Strand 5	2	327	332	anti-parallel
Strand 6	2	279	283	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	159	162	first strand
Strand 2	F	169	176	anti-parallel
Strand 3	F	179	182	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	159	162	first strand
Strand 2	F	169	176	anti-parallel
Strand 3	F	255	258	anti-parallel
Strand 4	F	205	209	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	265	269	first strand
Strand 2	F	276	283	anti-parallel
Strand 3	F	362	366	anti-parallel
Strand 4	F	313	316	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	265	269	first strand
Strand 2	F	276	283	anti-parallel
Strand 3	F	286	290	anti-parallel
Strand 4	F	328	330	parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	371	377	first strand
Strand 2	F	383	390	anti-parallel
Strand 3	F	469	472	anti-parallel
Strand 4	F	419	421	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	396	397	first strand
Strand 2	F	436	439	parallel
Strand 3	F	455	457	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	720	722	first strand
Strand 2	F	729	736	anti-parallel
Strand 3	F	815	818	anti-parallel
Strand 4	F	765	769	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	720	722	first strand
Strand 2	F	729	736	anti-parallel
Strand 3	F	739	746	anti-parallel
Strand 4	F	783	785	parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	823	824	first strand
Strand 2	F	841	843	anti-parallel
Strand 3	F	846	848	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	159	162	first strand
Strand 2	D	169	176	anti-parallel
Strand 3	D	179	181	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	159	162	first strand
Strand 2	D	169	176	anti-parallel
Strand 3	D	255	258	anti-parallel
Strand 4	D	205	209	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	265	269	first strand
Strand 2	D	276	283	anti-parallel
Strand 3	D	362	366	anti-parallel
Strand 4	D	313	316	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	265	269	first strand
Strand 2	D	276	283	anti-parallel
Strand 3	D	286	290	anti-parallel
Strand 4	D	327	330	parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	371	380	first strand
Strand 2	D	383	390	anti-parallel
Strand 3	D	469	472	anti-parallel
Strand 4	D	419	421	anti-parallel

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There are 5 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	371	380	first strand
Strand 2	D	383	390	anti-parallel
Strand 3	D	393	397	anti-parallel
Strand 4	D	436	438	parallel
Strand 5	D	456	457	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	476	481	first strand
Strand 2	D	488	495	anti-parallel
Strand 3	D	574	577	anti-parallel
Strand 4	D	524	528	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	476	481	first strand
Strand 2	D	488	495	anti-parallel
Strand 3	D	498	502	anti-parallel
Strand 4	D	539	541	parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	543	545	first strand
Strand 2	D	559	561	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	597	600	first strand
Strand 2	D	603	606	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	649	650	first strand
Strand 2	D	664	665	anti-parallel

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There are 3 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	836	838	first strand
Strand 2	D	922	924	anti-parallel
Strand 3	D	875	876	anti-parallel

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There are 3 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	840	843	first strand
Strand 2	D	846	850	anti-parallel
Strand 3	D	888	890	parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	929	932	first strand
Strand 2	D	939	946	anti-parallel
Strand 3	D	949	953	anti-parallel
Strand 4	D	991	993	parallel

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There are 3 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	929	932	first strand
Strand 2	D	939	946	anti-parallel
Strand 3	D	1025	1027	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8XMQ

Analysis of interatomic Contacts of Structural Units in PDB entry:
8XMQ