Analysis of interatomic Contacts of Structural Units in PDB entry:
8XN8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8XN8 entry

There are 2 chains in PDB entry 8XN8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 85GLN 528
A
 GLN 530ASN 534
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 19 helices in PDB entry 8XN8. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
144 148Right-handed 310
Helix 2
AA2
A
156 165Right-handed alpha
Helix 3
AA3
A
224 233Right-handed alpha
Helix 4
AA4
A
265 267Right-handed 310
Helix 5
AA5
A
305 318Right-handed alpha
Helix 6
AA6
A
347 353Right-handed alpha
Helix 7
AA7
A
356 360Right-handed 310
Helix 8
AA8
A
361 382Right-handed alpha
Helix 9
AA9
A
390 392Right-handed 310
Helix 10
AB1
A
398 400Right-handed 310
Helix 11
AB2
A
408 413Right-handed 310
Helix 12
AB3
A
415 420Right-handed alpha
Helix 13
AB4
A
427 431Right-handed 310
Helix 14
AB5
A
432 439Right-handed alpha
Helix 15
AB6
A
442 459Right-handed alpha
Helix 16
AB7
A
469 479Right-handed alpha
Helix 17
AB8
A
490 501Right-handed alpha
Helix 18
AB9
A
504 508Right-handed 310
Helix 19
AC1
A
510 520Right-handed alpha
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There are 4 sheets in PDB entry 8XN8. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
131 135first strand
Strand 2
A
120 125anti-parallel
Strand 3
A
109 112anti-parallel
Strand 4
A
88 90anti-parallel
Strand 5
A
139 141anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
221 222first strand
Strand 2
A
214 215anti-parallel
Strand 3
A
198 208anti-parallel
Strand 4
A
186 194anti-parallel
Strand 5
A
173 178anti-parallel
Strand 6
A
245 246parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
269 277first strand
Strand 2
A
281 288anti-parallel
Strand 3
A
292 299anti-parallel
Strand 4
A
337 340anti-parallel
Strand 5
A
327 331anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
394 396first strand
Strand 2
A
402 404anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il