Analysis of interatomic Contacts of Structural Units in PDB entry:
8XNB


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8XNB entry

There are 2 chains in PDB entry 8XNB (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 478TRP 846
B
 ARG 478TRP 846
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 4 helices in PDB entry 8XNB. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
626 634Right-handed alpha
Helix 2
AA2
A
739 743Right-handed 310
Helix 3
AA3
B
626 634Right-handed alpha
Helix 4
AA4
B
739 743Right-handed 310
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There are 6 sheets in PDB entry 8XNB. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 16 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
484 490first strand
Strand 2
A
494 504anti-parallel
Strand 3
A
513 521anti-parallel
Strand 4
A
529 538anti-parallel
Strand 5
A
553 566anti-parallel
Strand 6
A
580 593anti-parallel
Strand 7
A
599 613anti-parallel
Strand 8
A
638 650anti-parallel
Strand 9
A
661 674anti-parallel
Strand 10
A
679 695anti-parallel
Strand 11
A
710 723anti-parallel
Strand 12
A
756 768anti-parallel
Strand 13
A
775 790anti-parallel
Strand 14
A
797 810anti-parallel
Strand 15
A
820 826anti-parallel
Strand 16
A
837 841anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
699 700first strand
Strand 2
A
706 707anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
731 733first strand
Strand 2
A
752 754anti-parallel
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There are 16 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
484 490first strand
Strand 2
B
494 504anti-parallel
Strand 3
B
513 521anti-parallel
Strand 4
B
529 538anti-parallel
Strand 5
B
553 566anti-parallel
Strand 6
B
580 593anti-parallel
Strand 7
B
599 613anti-parallel
Strand 8
B
638 650anti-parallel
Strand 9
B
661 674anti-parallel
Strand 10
B
679 695anti-parallel
Strand 11
B
710 723anti-parallel
Strand 12
B
756 768anti-parallel
Strand 13
B
775 790anti-parallel
Strand 14
B
797 810anti-parallel
Strand 15
B
820 826anti-parallel
Strand 16
B
837 841anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
699 700first strand
Strand 2
B
706 707anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
731 733first strand
Strand 2
B
752 754anti-parallel
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