Analysis of interatomic Contacts of Structural Units in PDB entry:
8XNF

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8XNF entry

There are 4 chains in PDB entry 8XNF (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 19	ALA 614
B	GLN 27	PRO 1139
C	GLN 27	PRO 1139
D	GLN 27	PRO 1139

There are 99 helices in PDB entry 8XNF. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	20	53	Right-handed alpha
Helix 2	AA2	A	55	80	Right-handed alpha
Helix 3	AA3	A	81	83	Right-handed 310
Helix 4	AA4	A	92	101	Right-handed alpha
Helix 5	AA5	A	109	129	Right-handed alpha
Helix 6	AA6	A	147	155	Right-handed alpha
Helix 7	AA7	A	158	173	Right-handed alpha
Helix 8	AA8	A	176	194	Right-handed alpha
Helix 9	AA9	A	198	205	Right-handed alpha
Helix 10	AB1	A	206	208	Right-handed 310
Helix 11	AB2	A	220	249	Right-handed alpha
Helix 12	AB3	A	265	267	Right-handed 310
Helix 13	AB4	A	275	279	Right-handed 310
Helix 14	AB5	A	293	300	Right-handed alpha
Helix 15	AB6	A	303	317	Right-handed alpha
Helix 16	AB7	A	326	331	Right-handed alpha
Helix 17	AB8	A	365	385	Right-handed alpha
Helix 18	AB9	A	389	393	Right-handed 310
Helix 19	AC1	A	399	412	Right-handed alpha
Helix 20	AC2	A	414	421	Right-handed alpha
Helix 21	AC3	A	433	447	Right-handed alpha
Helix 22	AC4	A	449	466	Right-handed alpha
Helix 23	AC5	A	469	471	Right-handed 310
Helix 24	AC6	A	472	484	Right-handed alpha
Helix 25	AC7	A	499	502	Right-handed 310
Helix 26	AC8	A	503	508	Right-handed alpha
Helix 27	AC9	A	513	533	Right-handed alpha
Helix 28	AD1	A	538	542	Right-handed 310
Helix 29	AD2	A	548	559	Right-handed alpha
Helix 30	AD3	A	565	572	Right-handed alpha
Helix 31	AD4	A	581	588	Right-handed alpha
Helix 32	AD5	A	588	599	Right-handed alpha
Helix 33	AD6	A	600	602	Right-handed 310
Helix 34	AD7	B	295	304	Right-handed alpha
Helix 35	AD8	B	338	343	Right-handed alpha
Helix 36	AD9	B	366	372	Right-handed alpha
Helix 37	AE1	B	383	389	Right-handed 310
Helix 38	AE2	B	406	410	Right-handed 310
Helix 39	AE3	B	416	422	Right-handed alpha
Helix 40	AE4	B	438	443	Right-handed alpha
Helix 41	AE5	B	615	624	Right-handed alpha
Helix 42	AE6	B	736	741	Right-handed alpha
Helix 43	AE7	B	752	756	Right-handed 310
Helix 44	AE8	B	757	782	Right-handed alpha
Helix 45	AE9	B	815	823	Right-handed alpha
Helix 46	AF1	B	865	883	Right-handed alpha
Helix 47	AF2	B	885	889	Right-handed 310
Helix 48	AF3	B	896	907	Right-handed alpha
Helix 49	AF4	B	912	918	Right-handed alpha
Helix 50	AF5	B	918	940	Right-handed alpha
Helix 51	AF6	B	944	964	Right-handed alpha
Helix 52	AF7	B	965	967	Right-handed 310
Helix 53	AF8	B	975	981	Right-handed alpha
Helix 54	AF9	B	984	1032	Right-handed alpha
Helix 55	AG1	C	295	304	Right-handed alpha
Helix 56	AG2	C	338	343	Right-handed alpha
Helix 57	AG3	C	366	372	Right-handed alpha
Helix 58	AG4	C	383	389	Right-handed 310
Helix 59	AG5	C	406	410	Right-handed 310
Helix 60	AG6	C	416	422	Right-handed alpha
Helix 61	AG7	C	438	443	Right-handed alpha
Helix 62	AG8	C	616	625	Right-handed alpha
Helix 63	AG9	C	736	741	Right-handed alpha
Helix 64	AH1	C	745	751	Right-handed alpha
Helix 65	AH2	C	752	756	Right-handed 310
Helix 66	AH3	C	757	782	Right-handed alpha
Helix 67	AH4	C	810	814	Right-handed 310
Helix 68	AH5	C	815	823	Right-handed alpha
Helix 69	AH6	C	865	884	Right-handed alpha
Helix 70	AH7	C	885	889	Right-handed 310
Helix 71	AH8	C	896	907	Right-handed alpha
Helix 72	AH9	C	912	917	Right-handed alpha
Helix 73	AI1	C	918	940	Right-handed alpha
Helix 74	AI2	C	944	964	Right-handed alpha
Helix 75	AI3	C	975	981	Right-handed alpha
Helix 76	AI4	C	984	1032	Right-handed alpha
Helix 77	AI5	D	295	304	Right-handed alpha
Helix 78	AI6	D	338	343	Right-handed alpha
Helix 79	AI7	D	366	372	Right-handed alpha
Helix 80	AI8	D	383	389	Right-handed 310
Helix 81	AI9	D	406	410	Right-handed 310
Helix 82	AJ1	D	416	422	Right-handed alpha
Helix 83	AJ2	D	438	443	Right-handed alpha
Helix 84	AJ3	D	615	626	Right-handed alpha
Helix 85	AJ4	D	637	639	Right-handed 310
Helix 86	AJ5	D	736	742	Right-handed alpha
Helix 87	AJ6	D	745	754	Right-handed alpha
Helix 88	AJ7	D	757	782	Right-handed alpha
Helix 89	AJ8	D	810	814	Right-handed 310
Helix 90	AJ9	D	815	825	Right-handed alpha
Helix 91	AK1	D	865	884	Right-handed alpha
Helix 92	AK2	D	896	909	Right-handed alpha
Helix 93	AK3	D	912	917	Right-handed alpha
Helix 94	AK4	D	918	940	Right-handed alpha
Helix 95	AK5	D	944	964	Right-handed alpha
Helix 96	AK6	D	965	967	Right-handed 310
Helix 97	AK7	D	975	981	Right-handed alpha
Helix 98	AK8	D	984	1032	Right-handed alpha
Helix 99	AK9	D	1115	1117	Right-handed 310

There are 50 sheets in PDB entry 8XNF. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7, AE8, AE9, AF1, AF2, AF3, AF4, AF5,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	132	133	first strand
Strand 2	A	141	142	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	262	263	first strand
Strand 2	A	487	488	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	347	350	first strand
Strand 2	A	356	359	anti-parallel

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There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	28	31	first strand
Strand 2	B	62	66	anti-parallel
Strand 3	B	265	269	anti-parallel
Strand 4	B	90	94	anti-parallel
Strand 5	B	190	197	anti-parallel
Strand 6	B	200	207	anti-parallel
Strand 7	B	222	229	anti-parallel
Strand 8	B	37	38	parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	48	56	first strand
Strand 2	B	271	279	anti-parallel
Strand 3	B	285	290	anti-parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	84	85	first strand
Strand 2	B	237	241	anti-parallel
Strand 3	B	103	107	anti-parallel
Strand 4	B	116	120	anti-parallel
Strand 5	B	127	131	anti-parallel
Strand 6	B	169	170	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	311	313	first strand
Strand 2	B	596	598	anti-parallel
Strand 3	B	608	612	anti-parallel
Strand 4	B	647	650	anti-parallel
Strand 5	B	641	644	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	317	319	first strand
Strand 2	B	591	593	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	324	327	first strand
Strand 2	B	537	542	parallel
Strand 3	B	545	553	anti-parallel
Strand 4	B	583	587	anti-parallel
Strand 5	B	574	576	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	354	358	first strand
Strand 2	B	395	402	anti-parallel
Strand 3	B	507	512	anti-parallel
Strand 4	B	432	437	anti-parallel
Strand 5	B	376	379	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	452	453	first strand
Strand 2	B	492	493	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	473	474	first strand
Strand 2	B	487	488	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	564	565	first strand
Strand 2	D	43	44	parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	653	654	first strand
Strand 2	B	690	695	parallel
Strand 3	B	669	674	anti-parallel
Strand 4	B	663	666	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	701	703	first strand
Strand 2	D	787	789	parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	710	727	first strand
Strand 2	B	1058	1076	anti-parallel
Strand 3	B	1046	1055	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	710	727	first strand
Strand 2	B	1058	1076	anti-parallel
Strand 3	B	1093	1096	anti-parallel
Strand 4	B	1101	1104	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	732	735	first strand
Strand 2	B	857	860	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	787	788	first strand
Strand 2	C	701	702	parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1119	1124	first strand
Strand 2	B	1085	1089	anti-parallel
Strand 3	B	1079	1081	anti-parallel
Strand 4	B	1131	1132	parallel

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There are 7 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	28	31	first strand
Strand 2	C	62	66	anti-parallel
Strand 3	C	265	269	anti-parallel
Strand 4	C	90	94	anti-parallel
Strand 5	C	190	197	anti-parallel
Strand 6	C	200	206	anti-parallel
Strand 7	C	224	229	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	43	44	first strand
Strand 2	D	564	565	parallel

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There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	48	56	first strand
Strand 2	C	271	279	anti-parallel
Strand 3	C	285	290	anti-parallel

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There are 5 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	84	85	first strand
Strand 2	C	237	241	anti-parallel
Strand 3	C	103	107	anti-parallel
Strand 4	C	117	120	anti-parallel
Strand 5	C	127	130	anti-parallel

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There are 3 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	311	313	first strand
Strand 2	C	591	598	anti-parallel
Strand 3	C	317	319	anti-parallel

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There are 5 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	311	313	first strand
Strand 2	C	591	598	anti-parallel
Strand 3	C	608	612	anti-parallel
Strand 4	C	647	650	anti-parallel
Strand 5	C	641	644	anti-parallel

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There are 5 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	324	327	first strand
Strand 2	C	537	542	parallel
Strand 3	C	545	553	anti-parallel
Strand 4	C	583	587	anti-parallel
Strand 5	C	574	576	anti-parallel

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There are 5 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	354	358	first strand
Strand 2	C	395	402	anti-parallel
Strand 3	C	507	512	anti-parallel
Strand 4	C	432	437	anti-parallel
Strand 5	C	376	379	anti-parallel

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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	452	453	first strand
Strand 2	C	492	493	anti-parallel

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There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	473	474	first strand
Strand 2	C	487	488	anti-parallel

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There are 4 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	653	654	first strand
Strand 2	C	690	695	parallel
Strand 3	C	669	674	anti-parallel
Strand 4	C	663	664	anti-parallel

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There are 3 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	710	727	first strand
Strand 2	C	1058	1076	anti-parallel
Strand 3	C	1046	1055	anti-parallel

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There are 4 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	710	727	first strand
Strand 2	C	1058	1076	anti-parallel
Strand 3	C	1093	1096	anti-parallel
Strand 4	C	1101	1104	anti-parallel

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There are 2 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	732	735	first strand
Strand 2	C	857	860	anti-parallel

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There are 2 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	787	789	first strand
Strand 2	D	701	703	parallel

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There are 4 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1119	1124	first strand
Strand 2	C	1085	1089	anti-parallel
Strand 3	C	1079	1081	anti-parallel
Strand 4	C	1131	1132	parallel

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There are 7 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	28	31	first strand
Strand 2	D	62	66	anti-parallel
Strand 3	D	265	269	anti-parallel
Strand 4	D	90	94	anti-parallel
Strand 5	D	190	197	anti-parallel
Strand 6	D	200	207	anti-parallel
Strand 7	D	224	229	anti-parallel

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There are 3 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	48	56	first strand
Strand 2	D	271	279	anti-parallel
Strand 3	D	285	290	anti-parallel

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There are 6 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	84	85	first strand
Strand 2	D	237	241	anti-parallel
Strand 3	D	103	107	anti-parallel
Strand 4	D	116	121	anti-parallel
Strand 5	D	126	131	anti-parallel
Strand 6	D	168	170	anti-parallel

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There are 3 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	311	313	first strand
Strand 2	D	591	598	anti-parallel
Strand 3	D	317	319	anti-parallel

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There are 5 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	311	313	first strand
Strand 2	D	591	598	anti-parallel
Strand 3	D	608	612	anti-parallel
Strand 4	D	647	650	anti-parallel
Strand 5	D	641	643	anti-parallel

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There are 5 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	324	327	first strand
Strand 2	D	537	542	parallel
Strand 3	D	545	553	anti-parallel
Strand 4	D	583	587	anti-parallel
Strand 5	D	574	576	anti-parallel

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There are 5 strands in AE7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	354	358	first strand
Strand 2	D	395	402	anti-parallel
Strand 3	D	507	512	anti-parallel
Strand 4	D	432	437	anti-parallel
Strand 5	D	376	379	anti-parallel

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There are 2 strands in AE8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	452	453	first strand
Strand 2	D	492	493	anti-parallel

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There are 2 strands in AE9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	473	474	first strand
Strand 2	D	487	488	anti-parallel

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There are 4 strands in AF1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	653	654	first strand
Strand 2	D	690	695	parallel
Strand 3	D	669	674	anti-parallel
Strand 4	D	663	666	anti-parallel

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There are 3 strands in AF2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	710	727	first strand
Strand 2	D	1058	1075	anti-parallel
Strand 3	D	1046	1055	anti-parallel

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There are 2 strands in AF3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	732	735	first strand
Strand 2	D	857	860	anti-parallel

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There are 3 strands in AF4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1080	1081	first strand
Strand 2	D	1085	1089	anti-parallel
Strand 3	D	1119	1124	anti-parallel

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There are 2 strands in AF5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1093	1096	first strand
Strand 2	D	1101	1104	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8XNF

Analysis of interatomic Contacts of Structural Units in PDB entry:
8XNF