Analysis of interatomic Contacts of Structural Units in PDB entry:
8XOK


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8XOK entry

There is 1 chain in PDB entry 8XOK (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 6GLU 1280
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 48 helices in PDB entry 8XOK. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
17 24Right-handed alpha
Helix 2
AA2
A
27 37Right-handed alpha
Helix 3
AA3
A
48 51Right-handed 310
Helix 4
AA4
A
52 75Right-handed alpha
Helix 5
AA5
A
79 122Right-handed alpha
Helix 6
AA6
A
127 151Right-handed alpha
Helix 7
AA7
A
151 179Right-handed alpha
Helix 8
AA8
A
182 189Right-handed alpha
Helix 9
AA9
A
190 200Right-handed alpha
Helix 10
AB1
A
204 212Right-handed alpha
Helix 11
AB2
A
213 234Right-handed alpha
Helix 12
AB3
A
235 282Right-handed alpha
Helix 13
AB4
A
282 290Right-handed alpha
Helix 14
AB5
A
291 342Right-handed alpha
Helix 15
AB6
A
347 391Right-handed alpha
Helix 16
AB7
A
445 449Right-handed 310
Helix 17
AB8
A
450 457Right-handed alpha
Helix 18
AB9
A
488 495Right-handed alpha
Helix 19
AC1
A
500 511Right-handed alpha
Helix 20
AC2
A
513 520Right-handed alpha
Helix 21
AC3
A
529 533Right-handed 310
Helix 22
AC4
A
536 551Right-handed alpha
Helix 23
AC5
A
566 577Right-handed alpha
Helix 24
AC6
A
580 584Right-handed 310
Helix 25
AC7
A
594 600Right-handed alpha
Helix 26
AC8
A
616 620Right-handed 310
Helix 27
AC9
A
697 707Right-handed alpha
Helix 28
AD1
A
710 751Right-handed alpha
Helix 29
AD2
A
760 807Right-handed alpha
Helix 30
AD3
A
809 816Right-handed alpha
Helix 31
AD4
A
817 861Right-handed alpha
Helix 32
AD5
A
864 896Right-handed alpha
Helix 33
AD6
A
897 910Right-handed alpha
Helix 34
AD7
A
910 917Right-handed alpha
Helix 35
AD8
A
919 970Right-handed alpha
Helix 36
AD9
A
975 1018Right-handed alpha
Helix 37
AE1
A
1080 1090Right-handed alpha
Helix 38
AE2
A
1106 1108Right-handed 310
Helix 39
AE3
A
1109 1115Right-handed alpha
Helix 40
AE4
A
1130 1136Right-handed alpha
Helix 41
AE5
A
1142 1153Right-handed alpha
Helix 42
AE6
A
1155 1161Right-handed alpha
Helix 43
AE7
A
1164 1168Right-handed 310
Helix 44
AE8
A
1178 1194Right-handed alpha
Helix 45
AE9
A
1208 1222Right-handed alpha
Helix 46
AF1
A
1235 1240Right-handed alpha
Helix 47
AF2
A
1257 1264Right-handed alpha
Helix 48
AF3
A
1267 1277Right-handed alpha
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There are 5 sheets in PDB entry 8XOK. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
475 478first strand
Strand 2
A
555 559parallel
Strand 3
A
587 590parallel
Strand 4
A
440 444parallel
Strand 5
A
602 606parallel
Strand 6
A
611 613anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1042 1046first strand
Strand 2
A
1061 1064anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1119 1120first strand
Strand 2
A
1197 1202parallel
Strand 3
A
1227 1232parallel
Strand 4
A
1071 1073parallel
Strand 5
A
1243 1244parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1099 1100first strand
Strand 2
A
1103 1104anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1247 1248first strand
Strand 2
A
1251 1252anti-parallel
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