Analysis of interatomic Contacts of Structural Units in PDB entry:
8XP0

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8XP0 entry

There are 18 chains in PDB entry 8XP0 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
M	SER 5	ILE 323
N	MET 532	ASP 558
O	ASP 34	ASN 322
P	MET 51	ARG 137
Q	MET 51	ARG 137
R	MET 51	ARG 137
S	SER 5	ILE 323
T	MET 532	ASP 558
U	ASP 34	ASN 322
V	MET 51	ARG 137
W	MET 51	ARG 137
X	MET 51	ARG 137
Y	SER 5	ILE 323
Z	MET 532	ASP 558
a	ASP 34	ASN 322
b	MET 51	ARG 137
c	MET 51	ARG 137
d	MET 51	ARG 137

There are120 helices in PDB entry 8XP0. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	M	5	18	Right-handed alpha
Helix 2	AA2	M	18	28	Right-handed alpha
Helix 3	AA3	M	30	43	Right-handed alpha
Helix 4	AA4	M	48	66	Right-handed alpha
Helix 5	AA5	M	72	99	Right-handed alpha
Helix 6	AA6	M	105	112	Right-handed alpha
Helix 7	AA7	M	114	124	Right-handed alpha
Helix 8	AA8	M	126	137	Right-handed alpha
Helix 9	AA9	M	138	148	Right-handed alpha
Helix 10	AB1	M	150	162	Right-handed alpha
Helix 11	AB2	M	168	183	Right-handed alpha
Helix 12	AB3	M	196	205	Right-handed alpha
Helix 13	AB4	M	207	221	Right-handed alpha
Helix 14	AB5	M	223	233	Right-handed alpha
Helix 15	AB6	M	235	242	Right-handed 310
Helix 16	AB7	M	243	254	Right-handed alpha
Helix 17	AB8	M	255	266	Right-handed alpha
Helix 18	AB9	M	267	278	Right-handed alpha
Helix 19	AC1	M	279	293	Right-handed alpha
Helix 20	AC2	M	297	318	Right-handed alpha
Helix 21	AC3	N	533	541	Right-handed alpha
Helix 22	AC4	N	543	558	Right-handed alpha
Helix 23	AC5	O	51	74	Right-handed alpha
Helix 24	AC6	O	89	95	Right-handed alpha
Helix 25	AC7	O	119	131	Right-handed alpha
Helix 26	AC8	O	147	171	Right-handed alpha
Helix 27	AC9	O	185	189	Right-handed 310
Helix 28	AD1	O	221	225	Right-handed alpha
Helix 29	AD2	O	227	233	Right-handed alpha
Helix 30	AD3	O	239	255	Right-handed alpha
Helix 31	AD4	O	272	276	Right-handed alpha
Helix 32	AD5	P	52	59	Right-handed alpha
Helix 33	AD6	P	75	81	Right-handed alpha
Helix 34	AD7	P	127	137	Right-handed alpha
Helix 35	AD8	Q	52	59	Right-handed alpha
Helix 36	AD9	Q	74	81	Right-handed alpha
Helix 37	AE1	Q	127	137	Right-handed alpha
Helix 38	AE2	R	52	59	Right-handed alpha
Helix 39	AE3	R	75	81	Right-handed alpha
Helix 40	AE4	R	127	137	Right-handed alpha
Helix 41	AE5	S	6	18	Right-handed alpha
Helix 42	AE6	S	18	28	Right-handed alpha
Helix 43	AE7	S	30	43	Right-handed alpha
Helix 44	AE8	S	48	66	Right-handed alpha
Helix 45	AE9	S	72	99	Right-handed alpha
Helix 46	AF1	S	105	112	Right-handed alpha
Helix 47	AF2	S	114	124	Right-handed alpha
Helix 48	AF3	S	126	137	Right-handed alpha
Helix 49	AF4	S	138	148	Right-handed alpha
Helix 50	AF5	S	150	162	Right-handed alpha
Helix 51	AF6	S	168	183	Right-handed alpha
Helix 52	AF7	S	196	205	Right-handed alpha
Helix 53	AF8	S	207	221	Right-handed alpha
Helix 54	AF9	S	223	233	Right-handed alpha
Helix 55	AG1	S	235	242	Right-handed 310
Helix 56	AG2	S	243	254	Right-handed alpha
Helix 57	AG3	S	255	266	Right-handed alpha
Helix 58	AG4	S	267	278	Right-handed alpha
Helix 59	AG5	S	279	293	Right-handed alpha
Helix 60	AG6	S	297	318	Right-handed alpha
Helix 61	AG7	T	533	541	Right-handed alpha
Helix 62	AG8	T	543	558	Right-handed alpha
Helix 63	AG9	U	51	74	Right-handed alpha
Helix 64	AH1	U	89	95	Right-handed alpha
Helix 65	AH2	U	119	131	Right-handed alpha
Helix 66	AH3	U	147	171	Right-handed alpha
Helix 67	AH4	U	185	189	Right-handed 310
Helix 68	AH5	U	221	225	Right-handed alpha
Helix 69	AH6	U	227	233	Right-handed alpha
Helix 70	AH7	U	239	255	Right-handed alpha
Helix 71	AH8	U	272	276	Right-handed alpha
Helix 72	AH9	V	52	59	Right-handed alpha
Helix 73	AI1	V	75	81	Right-handed alpha
Helix 74	AI2	V	127	137	Right-handed alpha
Helix 75	AI3	W	52	59	Right-handed alpha
Helix 76	AI4	W	74	81	Right-handed alpha
Helix 77	AI5	W	127	137	Right-handed alpha
Helix 78	AI6	X	52	59	Right-handed alpha
Helix 79	AI7	X	75	81	Right-handed alpha
Helix 80	AI8	X	127	137	Right-handed alpha
Helix 81	AI9	Y	6	18	Right-handed alpha
Helix 82	AJ1	Y	18	28	Right-handed alpha
Helix 83	AJ2	Y	30	43	Right-handed alpha
Helix 84	AJ3	Y	48	66	Right-handed alpha
Helix 85	AJ4	Y	72	99	Right-handed alpha
Helix 86	AJ5	Y	105	112	Right-handed alpha
Helix 87	AJ6	Y	114	124	Right-handed alpha
Helix 88	AJ7	Y	126	137	Right-handed alpha
Helix 89	AJ8	Y	138	148	Right-handed alpha
Helix 90	AJ9	Y	150	162	Right-handed alpha
Helix 91	AK1	Y	168	183	Right-handed alpha
Helix 92	AK2	Y	196	205	Right-handed alpha
Helix 93	AK3	Y	207	221	Right-handed alpha
Helix 94	AK4	Y	223	233	Right-handed alpha
Helix 95	AK5	Y	235	242	Right-handed 310
Helix 96	AK6	Y	243	254	Right-handed alpha
Helix 97	AK7	Y	255	266	Right-handed alpha
Helix 98	AK8	Y	267	278	Right-handed alpha
Helix 99	AK9	Y	279	293	Right-handed alpha
Helix 100	AL1	Y	297	318	Right-handed alpha
Helix 101	AL2	Z	533	541	Right-handed alpha
Helix 102	AL3	Z	543	558	Right-handed alpha
Helix 103	AL4	a	51	74	Right-handed alpha
Helix 104	AL5	a	89	95	Right-handed alpha
Helix 105	AL6	a	119	131	Right-handed alpha
Helix 106	AL7	a	147	171	Right-handed alpha
Helix 107	AL8	a	185	189	Right-handed 310
Helix 108	AL9	a	221	225	Right-handed alpha
Helix 109	AM1	a	227	233	Right-handed alpha
Helix 110	AM2	a	239	255	Right-handed alpha
Helix 111	AM3	a	272	276	Right-handed alpha
Helix 112	AM4	b	52	59	Right-handed alpha
Helix 113	AM5	b	75	81	Right-handed alpha
Helix 114	AM6	b	127	137	Right-handed alpha
Helix 115	AM7	c	52	59	Right-handed alpha
Helix 116	AM8	c	74	81	Right-handed alpha
Helix 117	AM9	c	127	137	Right-handed alpha
Helix 118	AN1	d	52	59	Right-handed alpha
Helix 119	AN2	d	75	81	Right-handed alpha
Helix 120	AN3	d	127	137	Right-handed alpha

There are 14 sheets in PDB entry 8XP0. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	35	37	first strand
Strand 2	d	104	114	anti-parallel
Strand 3	d	117	125	anti-parallel
Strand 4	c	86	92	anti-parallel

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There are 9 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	35	37	first strand
Strand 2	d	104	114	anti-parallel
Strand 3	d	97	101	anti-parallel
Strand 4	d	62	74	anti-parallel
Strand 5	c	61	73	anti-parallel
Strand 6	c	97	101	anti-parallel
Strand 7	c	104	114	anti-parallel
Strand 8	c	117	125	anti-parallel
Strand 9	d	86	88	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	78	81	first strand
Strand 2	O	198	207	anti-parallel
Strand 3	O	85	88	anti-parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	78	81	first strand
Strand 2	O	198	207	anti-parallel
Strand 3	O	213	220	anti-parallel
Strand 4	O	114	118	anti-parallel
Strand 5	O	101	108	anti-parallel
Strand 6	O	176	183	anti-parallel

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There are 9 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	282	285	first strand
Strand 2	P	117	125	anti-parallel
Strand 3	P	104	114	anti-parallel
Strand 4	P	97	101	anti-parallel
Strand 5	P	61	74	anti-parallel
Strand 6	O	258	271	anti-parallel
Strand 7	O	292	296	anti-parallel
Strand 8	O	299	309	anti-parallel
Strand 9	O	312	320	anti-parallel

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There are 10 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Q	86	92	first strand
Strand 2	R	117	125	anti-parallel
Strand 3	R	104	114	anti-parallel
Strand 4	R	97	101	anti-parallel
Strand 5	R	62	74	anti-parallel
Strand 6	Q	61	73	anti-parallel
Strand 7	Q	97	101	anti-parallel
Strand 8	Q	104	114	anti-parallel
Strand 9	Q	117	125	anti-parallel
Strand 10	R	86	88	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Q	86	92	first strand
Strand 2	R	117	125	anti-parallel
Strand 3	R	104	114	anti-parallel
Strand 4	U	35	37	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	U	78	81	first strand
Strand 2	U	198	207	anti-parallel
Strand 3	U	85	88	anti-parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	U	78	81	first strand
Strand 2	U	198	207	anti-parallel
Strand 3	U	213	220	anti-parallel
Strand 4	U	114	118	anti-parallel
Strand 5	U	101	108	anti-parallel
Strand 6	U	176	183	anti-parallel

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There are 9 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	U	282	285	first strand
Strand 2	V	117	125	anti-parallel
Strand 3	V	104	114	anti-parallel
Strand 4	V	97	101	anti-parallel
Strand 5	V	61	74	anti-parallel
Strand 6	U	258	271	anti-parallel
Strand 7	U	292	296	anti-parallel
Strand 8	U	299	309	anti-parallel
Strand 9	U	312	320	anti-parallel

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There are 10 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	W	86	92	first strand
Strand 2	X	117	125	anti-parallel
Strand 3	X	104	114	anti-parallel
Strand 4	X	97	101	anti-parallel
Strand 5	X	62	74	anti-parallel
Strand 6	W	61	73	anti-parallel
Strand 7	W	97	101	anti-parallel
Strand 8	W	104	114	anti-parallel
Strand 9	W	117	125	anti-parallel
Strand 10	X	86	88	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	a	78	81	first strand
Strand 2	a	198	207	anti-parallel
Strand 3	a	85	88	anti-parallel

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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	a	78	81	first strand
Strand 2	a	198	207	anti-parallel
Strand 3	a	213	220	anti-parallel
Strand 4	a	114	118	anti-parallel
Strand 5	a	101	108	anti-parallel
Strand 6	a	176	183	anti-parallel

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There are 9 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	a	282	285	first strand
Strand 2	b	117	125	anti-parallel
Strand 3	b	104	114	anti-parallel
Strand 4	b	97	101	anti-parallel
Strand 5	b	61	74	anti-parallel
Strand 6	a	258	271	anti-parallel
Strand 7	a	292	296	anti-parallel
Strand 8	a	299	309	anti-parallel
Strand 9	a	312	320	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8XP0

Analysis of interatomic Contacts of Structural Units in PDB entry:
8XP0