Analysis of interatomic Contacts of Structural Units in PDB entry:
8XP5


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8XP5 entry

There are 2 chains in PDB entry 8XP5 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 3ARG 356
B
 GLN 3LEU 355
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 22 helices in PDB entry 8XP5. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
4 20Right-handed alpha
Helix 2
AA2
A
46 54Right-handed alpha
Helix 3
AA3
A
65 70Right-handed alpha
Helix 4
AA4
A
81 90Right-handed alpha
Helix 5
AA5
A
100 117Right-handed alpha
Helix 6
AA6
A
121 137Right-handed alpha
Helix 7
AA7
A
138 144Right-handed alpha
Helix 8
AA8
A
231 235Right-handed 310
Helix 9
AA9
A
242 247Right-handed alpha
Helix 10
AB1
A
343 354Right-handed alpha
Helix 11
AB2
B
4 20Right-handed alpha
Helix 12
AB3
B
23 27Right-handed 310
Helix 13
AB4
B
45 54Right-handed alpha
Helix 14
AB5
B
65 72Right-handed alpha
Helix 15
AB6
B
79 89Right-handed alpha
Helix 16
AB7
B
97 117Right-handed alpha
Helix 17
AB8
B
120 138Right-handed alpha
Helix 18
AB9
B
138 145Right-handed alpha
Helix 19
AC1
B
147 155Right-handed alpha
Helix 20
AC2
B
231 235Right-handed 310
Helix 21
AC3
B
242 248Right-handed alpha
Helix 22
AC4
B
343 354Right-handed alpha
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There are 4 sheets in PDB entry 8XP5. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
176 178first strand
Strand 2
A
207 212anti-parallel
Strand 3
A
296 302anti-parallel
Strand 4
A
261 263anti-parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
190 193first strand
Strand 2
A
198 201anti-parallel
Strand 3
A
330 340parallel
Strand 4
A
317 324anti-parallel
Strand 5
A
222 229anti-parallel
Strand 6
A
280 285anti-parallel
Strand 7
A
270 273anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
176 178first strand
Strand 2
B
207 212anti-parallel
Strand 3
B
296 302anti-parallel
Strand 4
B
261 263anti-parallel
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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
190 193first strand
Strand 2
B
198 201anti-parallel
Strand 3
B
330 340parallel
Strand 4
B
317 324anti-parallel
Strand 5
B
222 229anti-parallel
Strand 6
B
280 285anti-parallel
Strand 7
B
270 273anti-parallel
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