Analysis of interatomic Contacts of Structural Units in PDB entry:
8XPD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8XPD entry

There is 1 chain in PDB entry 8XPD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1ILE 444
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 19 helices in PDB entry 8XPD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
15 20Right-handed alpha
Helix 2
AA2
A
31 38Right-handed alpha
Helix 3
AA3
A
43 47Right-handed 310
Helix 4
AA4
A
54 70Right-handed alpha
Helix 5
AA5
A
79 84Right-handed alpha
Helix 6
AA6
A
91 108Right-handed alpha
Helix 7
AA7
A
122 128Right-handed alpha
Helix 8
AA8
A
129 134Right-handed 310
Helix 9
AA9
A
135 152Right-handed alpha
Helix 10
AB1
A
163 173Right-handed alpha
Helix 11
AB2
A
183 209Right-handed alpha
Helix 12
AB3
A
230 245Right-handed alpha
Helix 13
AB4
A
245 255Right-handed alpha
Helix 14
AB5
A
258 267Right-handed alpha
Helix 15
AB6
A
275 283Right-handed alpha
Helix 16
AB7
A
327 341Right-handed alpha
Helix 17
AB8
A
368 388Right-handed alpha
Helix 18
AB9
A
405 412Right-handed 310
Helix 19
AC1
A
429 442Right-handed alpha
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There are 3 sheets in PDB entry 8XPD. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
9 13first strand
Strand 2
A
73 77parallel
Strand 3
A
111 117parallel
Strand 4
A
157 162parallel
Strand 5
A
214 220parallel
Strand 6
A
288 292parallel
Strand 7
A
347 352parallel
Strand 8
A
392 398parallel
Strand 9
A
9 13parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
223 226first strand
Strand 2
A
296 300parallel
Strand 3
A
310 311anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
417 420first strand
Strand 2
A
425 428anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il