Analysis of interatomic Contacts of Structural Units in PDB entry:
8XPF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8XPF entry

There are 2 chains in PDB entry 8XPF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1PRO 294
C
 TRP 15ILE 29
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 15 helices in PDB entry 8XPF. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
2 14Right-handed alpha
Helix 2
AA2
A
23 38Right-handed alpha
Helix 3
AA3
A
52 56Right-handed 310
Helix 4
AA4
A
64 69Right-handed alpha
Helix 5
AA5
A
70 72Right-handed 310
Helix 6
AA6
A
73 85Right-handed alpha
Helix 7
AA7
A
102 105Right-handed 310
Helix 8
AA8
A
128 132Right-handed 310
Helix 9
AA9
A
156 160Right-handed alpha
Helix 10
AB1
A
177 184Right-handed alpha
Helix 11
AB2
A
243 254Right-handed alpha
Helix 12
AB3
A
255 260Right-handed alpha
Helix 13
AB4
A
261 263Right-handed 310
Helix 14
AB5
A
273 284Right-handed alpha
Helix 15
AB6
A
289 293Right-handed 310
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There are 2 sheets in PDB entry 8XPF. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
15 18first strand
Strand 2
A
194 198anti-parallel
Strand 3
A
134 139anti-parallel
Strand 4
A
214 224anti-parallel
Strand 5
A
89 100anti-parallel
Strand 6
A
58 59anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
185 187first strand
Strand 2
A
150 155anti-parallel
Strand 3
A
201 204anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il