Analysis of interatomic Contacts of Structural Units in PDB entry:
8XPG


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8XPG entry

There are 2 chains in PDB entry 8XPG (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 586PRO 807
B
 ASN 584PRO 807
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 13 helices in PDB entry 8XPG. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
586 590Right-handed 310
Helix 2
AA2
A
651 655Right-handed 310
Helix 3
AA3
A
676 678Right-handed 310
Helix 4
AA4
A
679 681Right-handed 310
Helix 5
AA5
A
682 699Right-handed alpha
Helix 6
AA6
A
754 760Right-handed alpha
Helix 7
AA7
A
762 793Right-handed alpha
Helix 8
AA8
B
586 591Right-handed alpha
Helix 9
AA9
B
676 678Right-handed 310
Helix 10
AB1
B
679 681Right-handed 310
Helix 11
AB2
B
682 698Right-handed alpha
Helix 12
AB3
B
754 759Right-handed alpha
Helix 13
AB4
B
763 793Right-handed alpha
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There are 5 sheets in PDB entry 8XPG. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
602 605first strand
Strand 2
A
609 613anti-parallel
Strand 3
A
619 625anti-parallel
Strand 4
A
632 639anti-parallel
Strand 5
A
657 658anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
602 605first strand
Strand 2
A
609 613anti-parallel
Strand 3
A
619 625anti-parallel
Strand 4
A
632 639anti-parallel
Strand 5
A
645 649anti-parallel
Strand 6
A
670 674anti-parallel
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There are 14 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
749 752first strand
Strand 2
A
740 743anti-parallel
Strand 3
A
732 735anti-parallel
Strand 4
A
723 727anti-parallel
Strand 5
A
710 715anti-parallel
Strand 6
A
701 706anti-parallel
Strand 7
A
801 803parallel
Strand 8
B
801 803anti-parallel
Strand 9
B
701 706parallel
Strand 10
B
710 715anti-parallel
Strand 11
B
723 727anti-parallel
Strand 12
B
732 735anti-parallel
Strand 13
B
740 743anti-parallel
Strand 14
B
749 752anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
602 605first strand
Strand 2
B
609 613anti-parallel
Strand 3
B
619 626anti-parallel
Strand 4
B
631 639anti-parallel
Strand 5
B
657 658anti-parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
602 605first strand
Strand 2
B
609 613anti-parallel
Strand 3
B
619 626anti-parallel
Strand 4
B
631 639anti-parallel
Strand 5
B
645 649anti-parallel
Strand 6
B
671 674anti-parallel
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