Analysis of interatomic Contacts of Structural Units in PDB entry:
8XPU


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8XPU entry

There are 2 chains in PDB entry 8XPU (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PHE 162ALA 631
B
 VAL 44THR 507
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 38 helices in PDB entry 8XPU. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
166 174Right-handed alpha
Helix 2
AA2
A
179 207Right-handed alpha
Helix 3
AA3
A
218 222Right-handed 310
Helix 4
AA4
A
230 236Right-handed alpha
Helix 5
AA5
A
242 256Right-handed alpha
Helix 6
AA6
A
287 301Right-handed alpha
Helix 7
AA7
A
324 342Right-handed alpha
Helix 8
AA8
A
356 372Right-handed alpha
Helix 9
AA9
A
385 393Right-handed alpha
Helix 10
AB1
A
413 428Right-handed alpha
Helix 11
AB2
A
441 446Right-handed alpha
Helix 12
AB3
A
450 459Right-handed alpha
Helix 13
AB4
A
509 515Right-handed alpha
Helix 14
AB5
A
519 534Right-handed alpha
Helix 15
AB6
A
534 540Right-handed alpha
Helix 16
AB7
A
585 589Right-handed 310
Helix 17
AB8
B
51 64Right-handed alpha
Helix 18
AB9
B
72 80Right-handed alpha
Helix 19
AC1
B
81 110Right-handed alpha
Helix 20
AC2
B
117 124Right-handed alpha
Helix 21
AC3
B
126 139Right-handed alpha
Helix 22
AC4
B
140 157Right-handed alpha
Helix 23
AC5
B
167 189Right-handed alpha
Helix 24
AC6
B
190 220Right-handed alpha
Helix 25
AC7
B
243 249Right-handed alpha
Helix 26
AC8
B
255 263Right-handed 310
Helix 27
AC9
B
269 300Right-handed alpha
Helix 28
AD1
B
301 307Right-handed alpha
Helix 29
AD2
B
313 319Right-handed alpha
Helix 30
AD3
B
325 354Right-handed alpha
Helix 31
AD4
B
355 357Right-handed 310
Helix 32
AD5
B
373 386Right-handed alpha
Helix 33
AD6
B
387 390Right-handed 310
Helix 34
AD7
B
400 422Right-handed alpha
Helix 35
AD8
B
434 454Right-handed alpha
Helix 36
AD9
B
454 467Right-handed alpha
Helix 37
AE1
B
468 474Right-handed alpha
Helix 38
AE2
B
485 501Right-handed alpha
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There are 4 sheets in PDB entry 8XPU. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
400 403first strand
Strand 2
A
377 381parallel
Strand 3
A
346 348parallel
Strand 4
A
305 308parallel
Strand 5
A
260 262parallel
Strand 6
A
225 228parallel
Strand 7
A
463 468parallel
Strand 8
A
432 434parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
541 544first strand
Strand 2
A
551 557anti-parallel
Strand 3
A
563 569anti-parallel
Strand 4
A
621 627anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
575 576first strand
Strand 2
A
616 617anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
593 594first strand
Strand 2
A
610 611anti-parallel
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