Analysis of interatomic Contacts of Structural Units in PDB entry:
8XPW


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8XPW entry

There are 2 chains in PDB entry 8XPW (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 40ASN 293
B
 ASN 40ASN 293
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 7 helices in PDB entry 8XPW. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
162 169Right-handed alpha
Helix 2
AA2
A
184 186Right-handed 310
Helix 3
AA3
A
233 240Right-handed 310
Helix 4
AA4
A
263 267Right-handed 310
Helix 5
AA5
B
162 168Right-handed alpha
Helix 6
AA6
B
233 240Right-handed 310
Helix 7
AA7
B
263 267Right-handed 310
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There are 8 sheets in PDB entry 8XPW. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
41 45first strand
Strand 2
A
273 283anti-parallel
Strand 3
A
87 97anti-parallel
Strand 4
A
81 84anti-parallel
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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
72 74first strand
Strand 2
A
100 104parallel
Strand 3
A
87 97anti-parallel
Strand 4
A
273 283anti-parallel
Strand 5
A
118 125anti-parallel
Strand 6
A
206 212anti-parallel
Strand 7
A
216 221anti-parallel
Strand 8
A
224 230anti-parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
58 59first strand
Strand 2
A
106 108anti-parallel
Strand 3
A
243 251anti-parallel
Strand 4
A
133 141anti-parallel
Strand 5
A
154 160anti-parallel
Strand 6
A
174 182anti-parallel
Strand 7
A
188 196anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
113 116first strand
Strand 2
A
289 292anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
41 45first strand
Strand 2
B
273 283anti-parallel
Strand 3
B
87 97anti-parallel
Strand 4
B
81 84anti-parallel
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There are 8 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
72 74first strand
Strand 2
B
100 104parallel
Strand 3
B
87 97anti-parallel
Strand 4
B
273 283anti-parallel
Strand 5
B
118 125anti-parallel
Strand 6
B
206 212anti-parallel
Strand 7
B
216 221anti-parallel
Strand 8
B
224 230anti-parallel
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There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
58 59first strand
Strand 2
B
106 108anti-parallel
Strand 3
B
243 251anti-parallel
Strand 4
B
133 141anti-parallel
Strand 5
B
154 160anti-parallel
Strand 6
B
174 182anti-parallel
Strand 7
B
188 196anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
113 116first strand
Strand 2
B
289 292anti-parallel
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