Analysis of interatomic Contacts of Structural Units in PDB entry:
8XQ3

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8XQ3 entry

There are 8 chains in PDB entry 8XQ3 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
B	GLU 176	THR 602
F	GLU 1	SER 119
A	GLU 176	THR 602
C	GLU 176	THR 602
D	GLU 176	THR 602
E	GLU 1	SER 119
G	GLU 1	SER 119
H	GLU 1	SER 119

There are 9 helices in PDB entry 8XQ3. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	B	393	399	Right-handed alpha
Helix 2	AA2	F	87	91	Right-handed 310
Helix 3	AA3	A	371	375	Right-handed 310
Helix 4	AA4	A	393	399	Right-handed alpha
Helix 5	AA5	C	393	399	Right-handed alpha
Helix 6	AA6	D	393	399	Right-handed alpha
Helix 7	AA7	E	87	91	Right-handed 310
Helix 8	AA8	G	87	91	Right-handed 310
Helix 9	AA9	H	87	91	Right-handed 310

There are 36 sheets in PDB entry 8XQ3. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	201	202	first strand
Strand 2	B	588	596	anti-parallel
Strand 3	B	572	581	anti-parallel
Strand 4	B	561	567	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	215	225	first strand
Strand 2	B	228	237	anti-parallel
Strand 3	B	247	257	anti-parallel
Strand 4	B	263	271	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	279	284	first strand
Strand 2	B	291	297	anti-parallel
Strand 3	B	314	319	anti-parallel
Strand 4	B	333	336	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	347	350	first strand
Strand 2	B	362	370	anti-parallel
Strand 3	B	356	357	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	347	350	first strand
Strand 2	B	362	370	anti-parallel
Strand 3	B	408	416	anti-parallel
Strand 4	B	427	430	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	442	447	first strand
Strand 2	B	450	455	anti-parallel
Strand 3	B	465	471	anti-parallel
Strand 4	B	476	480	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	512	515	first strand
Strand 2	B	520	526	anti-parallel
Strand 3	B	535	540	anti-parallel
Strand 4	B	545	550	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	3	6	first strand
Strand 2	F	17	25	anti-parallel
Strand 3	F	80	84	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	46	47	first strand
Strand 2	F	35	39	anti-parallel
Strand 3	F	92	97	anti-parallel
Strand 4	F	113	115	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	49	51	first strand
Strand 2	F	58	60	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	201	202	first strand
Strand 2	A	588	596	anti-parallel
Strand 3	A	572	581	anti-parallel
Strand 4	A	561	567	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	215	218	first strand
Strand 2	A	228	237	anti-parallel
Strand 3	A	247	257	anti-parallel
Strand 4	A	263	271	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	279	284	first strand
Strand 2	A	290	297	anti-parallel
Strand 3	A	314	320	anti-parallel
Strand 4	A	333	336	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	347	350	first strand
Strand 2	A	362	370	anti-parallel
Strand 3	A	408	416	anti-parallel
Strand 4	A	427	430	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	442	447	first strand
Strand 2	A	450	455	anti-parallel
Strand 3	A	465	468	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	512	515	first strand
Strand 2	A	520	526	anti-parallel
Strand 3	A	535	540	anti-parallel
Strand 4	A	545	550	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	201	202	first strand
Strand 2	C	588	596	anti-parallel
Strand 3	C	572	581	anti-parallel
Strand 4	C	561	567	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	215	218	first strand
Strand 2	C	234	237	anti-parallel
Strand 3	C	247	248	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	222	225	first strand
Strand 2	C	228	231	anti-parallel
Strand 3	C	250	259	anti-parallel
Strand 4	C	262	271	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	279	284	first strand
Strand 2	C	290	297	anti-parallel
Strand 3	C	314	320	anti-parallel
Strand 4	C	332	336	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	347	350	first strand
Strand 2	C	362	370	anti-parallel
Strand 3	C	408	416	anti-parallel
Strand 4	C	427	430	anti-parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	442	447	first strand
Strand 2	C	450	455	anti-parallel
Strand 3	C	465	468	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	512	515	first strand
Strand 2	C	520	526	anti-parallel
Strand 3	C	535	540	anti-parallel
Strand 4	C	545	550	anti-parallel

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There are 5 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	199	202	first strand
Strand 2	D	588	596	anti-parallel
Strand 3	D	572	581	anti-parallel
Strand 4	D	560	567	anti-parallel
Strand 5	D	508	509	parallel

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There are 3 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	215	218	first strand
Strand 2	D	234	237	anti-parallel
Strand 3	D	247	248	anti-parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	222	225	first strand
Strand 2	D	228	231	anti-parallel
Strand 3	D	250	257	anti-parallel
Strand 4	D	263	271	anti-parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	279	284	first strand
Strand 2	D	290	297	anti-parallel
Strand 3	D	314	320	anti-parallel
Strand 4	D	333	337	anti-parallel

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There are 4 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	347	350	first strand
Strand 2	D	362	370	anti-parallel
Strand 3	D	408	416	anti-parallel
Strand 4	D	427	430	anti-parallel

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There are 4 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	442	447	first strand
Strand 2	D	450	455	anti-parallel
Strand 3	D	465	471	anti-parallel
Strand 4	D	476	477	anti-parallel

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There are 4 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	512	515	first strand
Strand 2	D	520	526	anti-parallel
Strand 3	D	535	540	anti-parallel
Strand 4	D	545	550	anti-parallel

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There are 3 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	3	7	first strand
Strand 2	E	17	25	anti-parallel
Strand 3	E	80	84	anti-parallel

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There are 5 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	58	60	first strand
Strand 2	E	46	51	anti-parallel
Strand 3	E	34	39	anti-parallel
Strand 4	E	92	97	anti-parallel
Strand 5	E	113	115	anti-parallel

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There are 3 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	3	6	first strand
Strand 2	G	17	25	anti-parallel
Strand 3	G	80	84	anti-parallel

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There are 5 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	58	60	first strand
Strand 2	G	46	51	anti-parallel
Strand 3	G	34	39	anti-parallel
Strand 4	G	92	97	anti-parallel
Strand 5	G	113	115	anti-parallel

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There are 3 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	3	6	first strand
Strand 2	H	17	25	anti-parallel
Strand 3	H	80	84	anti-parallel

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There are 4 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	46	51	first strand
Strand 2	H	34	39	anti-parallel
Strand 3	H	92	97	anti-parallel
Strand 4	H	113	115	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8XQ3

Analysis of interatomic Contacts of Structural Units in PDB entry:
8XQ3