Analysis of interatomic Contacts of Structural Units in PDB entry:
8XR3


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8XR3 entry

There are 2 chains in PDB entry 8XR3 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
C
 MET 1TRP 331
A
 MET 1TRP 331
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 28 helices in PDB entry 8XR3. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
C
28 42Right-handed alpha
Helix 2
AA2
C
55 59Right-handed 310
Helix 3
AA3
C
60 71Right-handed alpha
Helix 4
AA4
C
75 80Right-handed alpha
Helix 5
AA5
C
104 120Right-handed alpha
Helix 6
AA6
C
137 151Right-handed alpha
Helix 7
AA7
C
163 177Right-handed alpha
Helix 8
AA8
C
194 198Right-handed 310
Helix 9
AA9
C
199 208Right-handed alpha
Helix 10
AB1
C
243 248Right-handed alpha
Helix 11
AB2
C
248 266Right-handed alpha
Helix 12
AB3
C
268 280Right-handed alpha
Helix 13
AB4
C
292 303Right-handed alpha
Helix 14
AB5
C
308 319Right-handed alpha
Helix 15
AB6
A
28 42Right-handed alpha
Helix 16
AB7
A
55 59Right-handed 310
Helix 17
AB8
A
60 71Right-handed alpha
Helix 18
AB9
A
75 80Right-handed alpha
Helix 19
AC1
A
104 120Right-handed alpha
Helix 20
AC2
A
137 151Right-handed alpha
Helix 21
AC3
A
163 177Right-handed alpha
Helix 22
AC4
A
194 198Right-handed 310
Helix 23
AC5
A
199 207Right-handed alpha
Helix 24
AC6
A
243 248Right-handed alpha
Helix 25
AC7
A
248 266Right-handed alpha
Helix 26
AC8
A
268 278Right-handed alpha
Helix 27
AC9
A
292 305Right-handed alpha
Helix 28
AD1
A
308 319Right-handed alpha
Back to top of page

There are 4 sheets in PDB entry 8XR3. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
3 5first strand
Strand 2
C
12 14anti-parallel
Back to list of sheets
Back to top of page

There are 9 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
17 19first strand
Strand 2
C
46 48parallel
Strand 3
C
81 86parallel
Strand 4
C
124 129parallel
Strand 5
C
154 160parallel
Strand 6
C
182 188parallel
Strand 7
C
210 214parallel
Strand 8
C
283 288parallel
Strand 9
C
17 19parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
3 5first strand
Strand 2
A
12 14anti-parallel
Back to list of sheets
Back to top of page

There are 9 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
17 19first strand
Strand 2
A
46 48parallel
Strand 3
A
81 86parallel
Strand 4
A
124 129parallel
Strand 5
A
154 160parallel
Strand 6
A
184 188parallel
Strand 7
A
210 214parallel
Strand 8
A
283 288parallel
Strand 9
A
17 19parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il