Analysis of interatomic Contacts of Structural Units in PDB entry:
8XR4

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8XR4 entry

There are 8 chains in PDB entry 8XR4 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	TRP 331
B	MET 1	TRP 331
C	MET 1	TRP 331
D	MET 1	TRP 331
E	MET 1	TRP 331
F	MET 1	TRP 331
G	MET 1	TRP 331
H	MET 1	TRP 331

There are123 helices in PDB entry 8XR4. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	28	42	Right-handed alpha
Helix 2	AA2	A	55	59	Right-handed 310
Helix 3	AA3	A	60	71	Right-handed alpha
Helix 4	AA4	A	75	80	Right-handed alpha
Helix 5	AA5	A	104	120	Right-handed alpha
Helix 6	AA6	A	137	151	Right-handed alpha
Helix 7	AA7	A	163	177	Right-handed alpha
Helix 8	AA8	A	194	198	Right-handed 310
Helix 9	AA9	A	199	208	Right-handed alpha
Helix 10	AB1	A	235	238	Right-handed 310
Helix 11	AB2	A	239	248	Right-handed alpha
Helix 12	AB3	A	248	266	Right-handed alpha
Helix 13	AB4	A	268	279	Right-handed alpha
Helix 14	AB5	A	292	304	Right-handed alpha
Helix 15	AB6	A	308	319	Right-handed alpha
Helix 16	AB7	B	28	42	Right-handed alpha
Helix 17	AB8	B	55	59	Right-handed 310
Helix 18	AB9	B	60	72	Right-handed alpha
Helix 19	AC1	B	75	80	Right-handed alpha
Helix 20	AC2	B	104	120	Right-handed alpha
Helix 21	AC3	B	137	151	Right-handed alpha
Helix 22	AC4	B	163	177	Right-handed alpha
Helix 23	AC5	B	194	198	Right-handed 310
Helix 24	AC6	B	199	208	Right-handed alpha
Helix 25	AC7	B	235	238	Right-handed 310
Helix 26	AC8	B	239	247	Right-handed alpha
Helix 27	AC9	B	248	266	Right-handed alpha
Helix 28	AD1	B	268	280	Right-handed alpha
Helix 29	AD2	B	292	303	Right-handed alpha
Helix 30	AD3	B	308	319	Right-handed alpha
Helix 31	AD4	C	28	42	Right-handed alpha
Helix 32	AD5	C	55	59	Right-handed 310
Helix 33	AD6	C	60	71	Right-handed alpha
Helix 34	AD7	C	75	80	Right-handed alpha
Helix 35	AD8	C	104	120	Right-handed alpha
Helix 36	AD9	C	137	151	Right-handed alpha
Helix 37	AE1	C	163	177	Right-handed alpha
Helix 38	AE2	C	194	198	Right-handed 310
Helix 39	AE3	C	199	208	Right-handed alpha
Helix 40	AE4	C	220	224	Right-handed 310
Helix 41	AE5	C	235	238	Right-handed 310
Helix 42	AE6	C	239	248	Right-handed alpha
Helix 43	AE7	C	248	265	Right-handed alpha
Helix 44	AE8	C	268	279	Right-handed alpha
Helix 45	AE9	C	292	305	Right-handed alpha
Helix 46	AF1	C	308	319	Right-handed alpha
Helix 47	AF2	D	28	42	Right-handed alpha
Helix 48	AF3	D	55	59	Right-handed 310
Helix 49	AF4	D	60	72	Right-handed alpha
Helix 50	AF5	D	75	80	Right-handed alpha
Helix 51	AF6	D	104	120	Right-handed alpha
Helix 52	AF7	D	137	151	Right-handed alpha
Helix 53	AF8	D	163	177	Right-handed alpha
Helix 54	AF9	D	194	198	Right-handed 310
Helix 55	AG1	D	199	207	Right-handed alpha
Helix 56	AG2	D	235	238	Right-handed 310
Helix 57	AG3	D	239	248	Right-handed alpha
Helix 58	AG4	D	248	264	Right-handed alpha
Helix 59	AG5	D	268	279	Right-handed alpha
Helix 60	AG6	D	292	305	Right-handed alpha
Helix 61	AG7	D	308	319	Right-handed alpha
Helix 62	AG8	E	28	43	Right-handed alpha
Helix 63	AG9	E	55	59	Right-handed 310
Helix 64	AH1	E	60	72	Right-handed alpha
Helix 65	AH2	E	75	80	Right-handed alpha
Helix 66	AH3	E	104	120	Right-handed alpha
Helix 67	AH4	E	137	151	Right-handed alpha
Helix 68	AH5	E	163	177	Right-handed alpha
Helix 69	AH6	E	194	198	Right-handed 310
Helix 70	AH7	E	199	208	Right-handed alpha
Helix 71	AH8	E	235	238	Right-handed 310
Helix 72	AH9	E	239	248	Right-handed alpha
Helix 73	AI1	E	248	265	Right-handed alpha
Helix 74	AI2	E	268	279	Right-handed alpha
Helix 75	AI3	E	292	305	Right-handed alpha
Helix 76	AI4	E	308	319	Right-handed alpha
Helix 77	AI5	F	28	42	Right-handed alpha
Helix 78	AI6	F	55	59	Right-handed 310
Helix 79	AI7	F	60	71	Right-handed alpha
Helix 80	AI8	F	75	80	Right-handed alpha
Helix 81	AI9	F	104	120	Right-handed alpha
Helix 82	AJ1	F	137	151	Right-handed alpha
Helix 83	AJ2	F	163	177	Right-handed alpha
Helix 84	AJ3	F	194	198	Right-handed 310
Helix 85	AJ4	F	199	208	Right-handed alpha
Helix 86	AJ5	F	224	232	Right-handed alpha
Helix 87	AJ6	F	235	238	Right-handed 310
Helix 88	AJ7	F	239	248	Right-handed alpha
Helix 89	AJ8	F	248	266	Right-handed alpha
Helix 90	AJ9	F	268	279	Right-handed alpha
Helix 91	AK1	F	292	303	Right-handed alpha
Helix 92	AK2	F	308	319	Right-handed alpha
Helix 93	AK3	G	28	42	Right-handed alpha
Helix 94	AK4	G	55	59	Right-handed 310
Helix 95	AK5	G	60	71	Right-handed alpha
Helix 96	AK6	G	75	80	Right-handed alpha
Helix 97	AK7	G	104	120	Right-handed alpha
Helix 98	AK8	G	137	151	Right-handed alpha
Helix 99	AK9	G	163	177	Right-handed alpha
Helix 100	AL1	G	194	198	Right-handed 310
Helix 101	AL2	G	199	207	Right-handed alpha
Helix 102	AL3	G	224	232	Right-handed alpha
Helix 103	AL4	G	235	238	Right-handed 310
Helix 104	AL5	G	239	248	Right-handed alpha
Helix 105	AL6	G	248	266	Right-handed alpha
Helix 106	AL7	G	268	279	Right-handed alpha
Helix 107	AL8	G	292	303	Right-handed alpha
Helix 108	AL9	G	308	319	Right-handed alpha
Helix 109	AM1	H	28	42	Right-handed alpha
Helix 110	AM2	H	55	59	Right-handed 310
Helix 111	AM3	H	60	72	Right-handed alpha
Helix 112	AM4	H	75	80	Right-handed alpha
Helix 113	AM5	H	104	120	Right-handed alpha
Helix 114	AM6	H	137	151	Right-handed alpha
Helix 115	AM7	H	163	177	Right-handed alpha
Helix 116	AM8	H	194	198	Right-handed 310
Helix 117	AM9	H	199	208	Right-handed alpha
Helix 118	AN1	H	235	238	Right-handed 310
Helix 119	AN2	H	239	248	Right-handed alpha
Helix 120	AN3	H	248	265	Right-handed alpha
Helix 121	AN4	H	268	279	Right-handed alpha
Helix 122	AN5	H	292	303	Right-handed alpha
Helix 123	AN6	H	308	319	Right-handed alpha

There are 16 sheets in PDB entry 8XR4. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	3	5	first strand
Strand 2	A	12	14	anti-parallel

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There are 9 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	17	19	first strand
Strand 2	A	46	48	parallel
Strand 3	A	81	86	parallel
Strand 4	A	124	129	parallel
Strand 5	A	154	160	parallel
Strand 6	A	182	188	parallel
Strand 7	A	210	214	parallel
Strand 8	A	285	288	parallel
Strand 9	A	17	19	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	3	5	first strand
Strand 2	B	12	14	anti-parallel

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There are 9 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	17	19	first strand
Strand 2	B	46	48	parallel
Strand 3	B	81	86	parallel
Strand 4	B	124	129	parallel
Strand 5	B	154	160	parallel
Strand 6	B	182	188	parallel
Strand 7	B	210	214	parallel
Strand 8	B	285	288	parallel
Strand 9	B	17	19	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	3	5	first strand
Strand 2	C	12	14	anti-parallel

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There are 9 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	17	19	first strand
Strand 2	C	46	48	parallel
Strand 3	C	81	86	parallel
Strand 4	C	124	129	parallel
Strand 5	C	154	160	parallel
Strand 6	C	182	188	parallel
Strand 7	C	210	214	parallel
Strand 8	C	285	288	parallel
Strand 9	C	17	19	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	3	5	first strand
Strand 2	D	12	14	anti-parallel

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There are 9 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	17	19	first strand
Strand 2	D	46	48	parallel
Strand 3	D	81	86	parallel
Strand 4	D	124	129	parallel
Strand 5	D	154	160	parallel
Strand 6	D	182	188	parallel
Strand 7	D	210	214	parallel
Strand 8	D	285	288	parallel
Strand 9	D	17	19	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	3	5	first strand
Strand 2	E	12	14	anti-parallel

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There are 9 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	17	19	first strand
Strand 2	E	46	48	parallel
Strand 3	E	81	86	parallel
Strand 4	E	124	129	parallel
Strand 5	E	154	160	parallel
Strand 6	E	182	188	parallel
Strand 7	E	210	214	parallel
Strand 8	E	285	288	parallel
Strand 9	E	17	19	parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	3	5	first strand
Strand 2	F	12	14	anti-parallel

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There are 9 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	17	19	first strand
Strand 2	F	46	48	parallel
Strand 3	F	81	86	parallel
Strand 4	F	124	129	parallel
Strand 5	F	154	160	parallel
Strand 6	F	182	188	parallel
Strand 7	F	210	214	parallel
Strand 8	F	285	288	parallel
Strand 9	F	17	19	parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	3	5	first strand
Strand 2	G	12	14	anti-parallel

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There are 9 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	17	19	first strand
Strand 2	G	46	48	parallel
Strand 3	G	81	86	parallel
Strand 4	G	124	129	parallel
Strand 5	G	154	160	parallel
Strand 6	G	182	188	parallel
Strand 7	G	210	214	parallel
Strand 8	G	285	288	parallel
Strand 9	G	17	19	parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	3	5	first strand
Strand 2	H	12	14	anti-parallel

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There are 9 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	17	19	first strand
Strand 2	H	46	48	parallel
Strand 3	H	81	86	parallel
Strand 4	H	124	129	parallel
Strand 5	H	154	160	parallel
Strand 6	H	182	188	parallel
Strand 7	H	210	214	parallel
Strand 8	H	285	288	parallel
Strand 9	H	17	19	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8XR4

Analysis of interatomic Contacts of Structural Units in PDB entry:
8XR4