Analysis of interatomic Contacts of Structural Units in PDB entry:
8XRF

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8XRF entry

There are 2 chains in PDB entry 8XRF (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	VAL 413	PHE 1191
B	VAL 413	LYS 907

There are 78 helices in PDB entry 8XRF. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	428	431	Right-handed 310
Helix 2	AA2	A	439	451	Right-handed alpha
Helix 3	AA3	A	476	479	Right-handed 310
Helix 4	AA4	A	496	501	Right-handed alpha
Helix 5	AA5	A	502	513	Right-handed alpha
Helix 6	AA6	A	522	527	Right-handed alpha
Helix 7	AA7	A	541	546	Right-handed alpha
Helix 8	AA8	A	546	560	Right-handed alpha
Helix 9	AA9	A	560	566	Right-handed alpha
Helix 10	AB1	A	592	603	Right-handed alpha
Helix 11	AB2	A	616	620	Right-handed 310
Helix 12	AB3	A	621	631	Right-handed alpha
Helix 13	AB4	A	632	634	Right-handed 310
Helix 14	AB5	A	642	654	Right-handed alpha
Helix 15	AB6	A	656	664	Right-handed alpha
Helix 16	AB7	A	672	683	Right-handed alpha
Helix 17	AB8	A	687	707	Right-handed alpha
Helix 18	AB9	A	715	729	Right-handed alpha
Helix 19	AC1	A	738	749	Right-handed alpha
Helix 20	AC2	A	754	767	Right-handed alpha
Helix 21	AC3	A	787	791	Right-handed 310
Helix 22	AC4	A	806	814	Right-handed alpha
Helix 23	AC5	A	815	820	Right-handed alpha
Helix 24	AC6	A	842	846	Right-handed 310
Helix 25	AC7	A	864	877	Right-handed alpha
Helix 26	AC8	A	882	892	Right-handed alpha
Helix 27	AC9	A	942	952	Right-handed alpha
Helix 28	AD1	A	953	958	Right-handed alpha
Helix 29	AD2	A	982	990	Right-handed alpha
Helix 30	AD3	A	997	1003	Right-handed alpha
Helix 31	AD4	A	1027	1071	Right-handed alpha
Helix 32	AD5	A	1075	1079	Right-handed 310
Helix 33	AD6	A	1081	1092	Right-handed alpha
Helix 34	AD7	A	1098	1104	Right-handed alpha
Helix 35	AD8	A	1109	1117	Right-handed alpha
Helix 36	AD9	A	1122	1127	Right-handed alpha
Helix 37	AE1	A	1129	1133	Right-handed 310
Helix 38	AE2	A	1134	1160	Right-handed alpha
Helix 39	AE3	A	1166	1187	Right-handed alpha
Helix 40	AE4	B	428	431	Right-handed 310
Helix 41	AE5	B	439	451	Right-handed alpha
Helix 42	AE6	B	476	480	Right-handed 310
Helix 43	AE7	B	496	501	Right-handed alpha
Helix 44	AE8	B	502	513	Right-handed alpha
Helix 45	AE9	B	525	529	Right-handed 310
Helix 46	AF1	B	541	546	Right-handed alpha
Helix 47	AF2	B	546	560	Right-handed alpha
Helix 48	AF3	B	560	566	Right-handed alpha
Helix 49	AF4	B	592	603	Right-handed alpha
Helix 50	AF5	B	616	620	Right-handed 310
Helix 51	AF6	B	621	631	Right-handed alpha
Helix 52	AF7	B	632	634	Right-handed 310
Helix 53	AF8	B	644	654	Right-handed alpha
Helix 54	AF9	B	656	664	Right-handed alpha
Helix 55	AG1	B	672	683	Right-handed alpha
Helix 56	AG2	B	687	707	Right-handed alpha
Helix 57	AG3	B	715	729	Right-handed alpha
Helix 58	AG4	B	738	749	Right-handed alpha
Helix 59	AG5	B	754	767	Right-handed alpha
Helix 60	AG6	B	787	791	Right-handed 310
Helix 61	AG7	B	806	814	Right-handed alpha
Helix 62	AG8	B	815	820	Right-handed alpha
Helix 63	AG9	B	842	846	Right-handed 310
Helix 64	AH1	B	864	877	Right-handed alpha
Helix 65	AH2	B	881	893	Right-handed alpha
Helix 66	AH3	B	942	952	Right-handed alpha
Helix 67	AH4	B	953	958	Right-handed alpha
Helix 68	AH5	B	982	990	Right-handed alpha
Helix 69	AH6	B	997	1003	Right-handed alpha
Helix 70	AH7	B	1027	1071	Right-handed alpha
Helix 71	AH8	B	1075	1079	Right-handed 310
Helix 72	AH9	B	1081	1092	Right-handed alpha
Helix 73	AI1	B	1098	1104	Right-handed alpha
Helix 74	AI2	B	1109	1117	Right-handed alpha
Helix 75	AI3	B	1122	1127	Right-handed alpha
Helix 76	AI4	B	1129	1133	Right-handed 310
Helix 77	AI5	B	1134	1160	Right-handed alpha
Helix 78	AI6	B	1166	1187	Right-handed alpha

There are 17 sheets in PDB entry 8XRF. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	418	419	first strand
Strand 2	A	465	469	anti-parallel
Strand 3	A	433	437	parallel
Strand 4	A	533	537	parallel
Strand 5	A	569	572	parallel
Strand 6	A	636	640	anti-parallel
Strand 7	A	684	686	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	481	483	first strand
Strand 2	A	493	495	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	588	590	first strand
Strand 2	A	577	581	anti-parallel
Strand 3	A	609	613	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	736	737	first strand
Strand 2	A	802	805	anti-parallel
Strand 3	A	779	782	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	824	827	first strand
Strand 2	A	830	834	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	849	852	first strand
Strand 2	A	857	860	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	909	913	first strand
Strand 2	A	916	920	anti-parallel
Strand 3	A	1006	1008	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	922	926	first strand
Strand 2	A	931	936	anti-parallel
Strand 3	A	974	977	anti-parallel
Strand 4	A	962	965	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1014	1016	first strand
Strand 2	A	1022	1024	anti-parallel

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There are 7 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	418	419	first strand
Strand 2	B	465	469	anti-parallel
Strand 3	B	433	437	parallel
Strand 4	B	533	537	parallel
Strand 5	B	569	572	parallel
Strand 6	B	636	640	anti-parallel
Strand 7	B	684	686	parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	588	590	first strand
Strand 2	B	577	581	anti-parallel
Strand 3	B	609	613	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	736	737	first strand
Strand 2	B	802	805	anti-parallel
Strand 3	B	779	782	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	824	827	first strand
Strand 2	B	830	834	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	849	852	first strand
Strand 2	B	857	860	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	909	913	first strand
Strand 2	B	916	920	anti-parallel
Strand 3	B	1006	1008	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	922	926	first strand
Strand 2	B	931	936	anti-parallel
Strand 3	B	974	978	anti-parallel
Strand 4	B	960	965	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1014	1016	first strand
Strand 2	B	1022	1024	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8XRF

Analysis of interatomic Contacts of Structural Units in PDB entry:
8XRF