Analysis of interatomic Contacts of Structural Units in PDB entry:
8XRU

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8XRU entry

There are 3 chains in PDB entry 8XRU (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 3	GLY 765
B	THR 3	GLY 765
C	ALA 355	GLN 613

There are 70 helices in PDB entry 8XRU. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	4	8	Right-handed 310
Helix 2	AA2	A	12	24	Right-handed alpha
Helix 3	AA3	A	25	33	Right-handed alpha
Helix 4	AA4	A	41	48	Right-handed alpha
Helix 5	AA5	A	58	70	Right-handed alpha
Helix 6	AA6	A	99	105	Right-handed alpha
Helix 7	AA7	A	108	126	Right-handed alpha
Helix 8	AA8	A	146	150	Right-handed 310
Helix 9	AA9	A	154	171	Right-handed alpha
Helix 10	AB1	A	193	197	Right-handed 310
Helix 11	AB2	A	205	213	Right-handed alpha
Helix 12	AB3	A	213	223	Right-handed alpha
Helix 13	AB4	A	243	248	Right-handed alpha
Helix 14	AB5	A	266	274	Right-handed alpha
Helix 15	AB6	A	280	291	Right-handed alpha
Helix 16	AB7	A	301	312	Right-handed alpha
Helix 17	AB8	A	316	334	Right-handed alpha
Helix 18	AB9	A	344	352	Right-handed alpha
Helix 19	AC1	A	354	369	Right-handed alpha
Helix 20	AC2	A	379	383	Right-handed 310
Helix 21	AC3	A	415	421	Right-handed alpha
Helix 22	AC4	A	438	442	Right-handed 310
Helix 23	AC5	A	444	453	Right-handed alpha
Helix 24	AC6	A	495	508	Right-handed alpha
Helix 25	AC7	A	519	523	Right-handed 310
Helix 26	AC8	A	537	547	Right-handed alpha
Helix 27	AC9	A	565	571	Right-handed alpha
Helix 28	AD1	A	583	593	Right-handed alpha
Helix 29	AD2	A	609	613	Right-handed 310
Helix 30	AD3	A	725	727	Right-handed 310
Helix 31	AD4	A	752	756	Right-handed 310
Helix 32	AD5	B	4	8	Right-handed 310
Helix 33	AD6	B	12	22	Right-handed alpha
Helix 34	AD7	B	25	33	Right-handed alpha
Helix 35	AD8	B	41	48	Right-handed alpha
Helix 36	AD9	B	58	71	Right-handed alpha
Helix 37	AE1	B	99	105	Right-handed alpha
Helix 38	AE2	B	108	126	Right-handed alpha
Helix 39	AE3	B	146	150	Right-handed 310
Helix 40	AE4	B	154	171	Right-handed alpha
Helix 41	AE5	B	193	197	Right-handed 310
Helix 42	AE6	B	205	213	Right-handed alpha
Helix 43	AE7	B	213	223	Right-handed alpha
Helix 44	AE8	B	243	248	Right-handed alpha
Helix 45	AE9	B	266	274	Right-handed alpha
Helix 46	AF1	B	280	291	Right-handed alpha
Helix 47	AF2	B	301	312	Right-handed alpha
Helix 48	AF3	B	316	334	Right-handed alpha
Helix 49	AF4	B	344	352	Right-handed alpha
Helix 50	AF5	B	354	369	Right-handed alpha
Helix 51	AF6	B	379	383	Right-handed 310
Helix 52	AF7	B	415	421	Right-handed alpha
Helix 53	AF8	B	438	442	Right-handed 310
Helix 54	AF9	B	444	453	Right-handed alpha
Helix 55	AG1	B	495	508	Right-handed alpha
Helix 56	AG2	B	519	523	Right-handed 310
Helix 57	AG3	B	537	548	Right-handed alpha
Helix 58	AG4	B	565	571	Right-handed alpha
Helix 59	AG5	B	583	593	Right-handed alpha
Helix 60	AG6	B	609	613	Right-handed 310
Helix 61	AG7	B	725	727	Right-handed 310
Helix 62	AG8	B	752	756	Right-handed 310
Helix 63	AG9	C	379	383	Right-handed 310
Helix 64	AH1	C	411	414	Right-handed 310
Helix 65	AH2	C	444	453	Right-handed alpha
Helix 66	AH3	C	496	508	Right-handed alpha
Helix 67	AH4	C	537	547	Right-handed alpha
Helix 68	AH5	C	586	587	Right-handed 310
Helix 69	AH6	C	589	591	Right-handed 310
Helix 70	AH7	C	609	613	Right-handed 310

There are 18 sheets in PDB entry 8XRU. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	130	131	first strand
Strand 2	A	79	82	parallel
Strand 3	A	53	55	parallel
Strand 4	A	34	37	parallel
Strand 5	A	296	297	parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	183	187	first strand
Strand 2	A	227	230	parallel
Strand 3	A	260	263	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	234	235	first strand
Strand 2	A	238	239	anti-parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	370	374	first strand
Strand 2	A	573	576	anti-parallel
Strand 3	A	552	557	parallel
Strand 4	A	511	517	parallel
Strand 5	A	405	409	parallel
Strand 6	A	458	462	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	385	386	first strand
Strand 2	A	395	396	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	468	471	first strand
Strand 2	A	488	491	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	648	656	first strand
Strand 2	A	665	674	anti-parallel
Strand 3	A	715	723	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	701	710	first strand
Strand 2	A	680	690	anti-parallel
Strand 3	A	741	748	anti-parallel
Strand 4	A	757	763	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	729	730	first strand
Strand 2	A	736	737	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	130	131	first strand
Strand 2	B	79	82	parallel
Strand 3	B	53	55	parallel
Strand 4	B	34	37	parallel
Strand 5	B	296	297	parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	183	187	first strand
Strand 2	B	227	230	parallel
Strand 3	B	260	263	parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	234	235	first strand
Strand 2	B	238	239	anti-parallel

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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	370	374	first strand
Strand 2	B	573	576	anti-parallel
Strand 3	B	552	557	parallel
Strand 4	B	511	517	parallel
Strand 5	B	405	409	parallel
Strand 6	B	458	462	parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	468	471	first strand
Strand 2	B	488	491	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	648	655	first strand
Strand 2	B	665	674	anti-parallel
Strand 3	B	715	723	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	701	710	first strand
Strand 2	B	680	690	anti-parallel
Strand 3	B	741	748	anti-parallel
Strand 4	B	757	763	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	729	730	first strand
Strand 2	B	736	737	anti-parallel

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There are 6 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	370	374	first strand
Strand 2	C	573	576	anti-parallel
Strand 3	C	552	557	parallel
Strand 4	C	511	517	parallel
Strand 5	C	405	409	parallel
Strand 6	C	458	462	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8XRU

Analysis of interatomic Contacts of Structural Units in PDB entry:
8XRU