Analysis of interatomic Contacts of Structural Units in PDB entry:
8XRW

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8XRW entry

There are 12 chains in PDB entry 8XRW (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
I	MET 1	LYS 156
J	MET 1	LYS 156
L	MET 1	LYS 156
A	MET 1	ALA 157
B	MET 1	LYS 156
C	MET 1	LYS 156
D	MET 1	LYS 156
E	MET 1	LYS 156
F	MET 1	LYS 156
G	MET 1	ALA 157
H	MET 1	LYS 156
K	MET 1	LYS 156

There are 99 helices in PDB entry 8XRW. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	I	15	27	Right-handed alpha
Helix 2	AA2	I	39	43	Right-handed 310
Helix 3	AA3	I	47	59	Right-handed alpha
Helix 4	AA4	I	73	81	Right-handed alpha
Helix 5	AA5	I	95	110	Right-handed alpha
Helix 6	AA6	I	121	125	Right-handed 310
Helix 7	AA7	I	128	138	Right-handed alpha
Helix 8	AA8	I	147	149	Right-handed 310
Helix 9	AA9	I	150	155	Right-handed alpha
Helix 10	AB1	J	15	29	Right-handed alpha
Helix 11	AB2	J	47	60	Right-handed alpha
Helix 12	AB3	J	73	81	Right-handed alpha
Helix 13	AB4	J	95	110	Right-handed alpha
Helix 14	AB5	J	121	125	Right-handed 310
Helix 15	AB6	J	128	138	Right-handed alpha
Helix 16	AB7	J	147	149	Right-handed 310
Helix 17	AB8	J	150	156	Right-handed alpha
Helix 18	AB9	L	15	27	Right-handed alpha
Helix 19	AC1	L	47	60	Right-handed alpha
Helix 20	AC2	L	73	81	Right-handed alpha
Helix 21	AC3	L	95	110	Right-handed alpha
Helix 22	AC4	L	121	125	Right-handed 310
Helix 23	AC5	L	128	138	Right-handed alpha
Helix 24	AC6	L	147	149	Right-handed 310
Helix 25	AC7	L	150	156	Right-handed alpha
Helix 26	AC8	A	15	27	Right-handed alpha
Helix 27	AC9	A	47	60	Right-handed alpha
Helix 28	AD1	A	73	81	Right-handed alpha
Helix 29	AD2	A	95	110	Right-handed alpha
Helix 30	AD3	A	121	125	Right-handed 310
Helix 31	AD4	A	128	138	Right-handed alpha
Helix 32	AD5	A	147	149	Right-handed 310
Helix 33	AD6	A	150	155	Right-handed alpha
Helix 34	AD7	B	15	27	Right-handed alpha
Helix 35	AD8	B	39	43	Right-handed 310
Helix 36	AD9	B	47	60	Right-handed alpha
Helix 37	AE1	B	73	81	Right-handed alpha
Helix 38	AE2	B	95	110	Right-handed alpha
Helix 39	AE3	B	121	125	Right-handed 310
Helix 40	AE4	B	128	138	Right-handed alpha
Helix 41	AE5	B	147	149	Right-handed 310
Helix 42	AE6	B	150	155	Right-handed alpha
Helix 43	AE7	C	15	27	Right-handed alpha
Helix 44	AE8	C	47	59	Right-handed alpha
Helix 45	AE9	C	73	81	Right-handed alpha
Helix 46	AF1	C	95	110	Right-handed alpha
Helix 47	AF2	C	121	125	Right-handed 310
Helix 48	AF3	C	128	138	Right-handed alpha
Helix 49	AF4	C	147	149	Right-handed 310
Helix 50	AF5	C	150	155	Right-handed alpha
Helix 51	AF6	D	15	27	Right-handed alpha
Helix 52	AF7	D	39	43	Right-handed 310
Helix 53	AF8	D	47	60	Right-handed alpha
Helix 54	AF9	D	73	81	Right-handed alpha
Helix 55	AG1	D	95	110	Right-handed alpha
Helix 56	AG2	D	121	125	Right-handed 310
Helix 57	AG3	D	128	138	Right-handed alpha
Helix 58	AG4	D	147	149	Right-handed 310
Helix 59	AG5	D	150	156	Right-handed alpha
Helix 60	AG6	E	15	27	Right-handed alpha
Helix 61	AG7	E	47	60	Right-handed alpha
Helix 62	AG8	E	73	81	Right-handed alpha
Helix 63	AG9	E	95	110	Right-handed alpha
Helix 64	AH1	E	121	125	Right-handed 310
Helix 65	AH2	E	128	138	Right-handed alpha
Helix 66	AH3	E	147	149	Right-handed 310
Helix 67	AH4	E	150	155	Right-handed alpha
Helix 68	AH5	F	15	27	Right-handed alpha
Helix 69	AH6	F	47	60	Right-handed alpha
Helix 70	AH7	F	73	81	Right-handed alpha
Helix 71	AH8	F	95	110	Right-handed alpha
Helix 72	AH9	F	121	125	Right-handed 310
Helix 73	AI1	F	128	138	Right-handed alpha
Helix 74	AI2	F	147	149	Right-handed 310
Helix 75	AI3	F	150	155	Right-handed alpha
Helix 76	AI4	G	15	28	Right-handed alpha
Helix 77	AI5	G	47	60	Right-handed alpha
Helix 78	AI6	G	73	81	Right-handed alpha
Helix 79	AI7	G	95	110	Right-handed alpha
Helix 80	AI8	G	121	125	Right-handed 310
Helix 81	AI9	G	128	138	Right-handed alpha
Helix 82	AJ1	G	147	149	Right-handed 310
Helix 83	AJ2	G	150	155	Right-handed alpha
Helix 84	AJ3	H	15	27	Right-handed alpha
Helix 85	AJ4	H	47	60	Right-handed alpha
Helix 86	AJ5	H	73	81	Right-handed alpha
Helix 87	AJ6	H	95	110	Right-handed alpha
Helix 88	AJ7	H	121	125	Right-handed 310
Helix 89	AJ8	H	128	138	Right-handed alpha
Helix 90	AJ9	H	147	149	Right-handed 310
Helix 91	AK1	H	150	155	Right-handed alpha
Helix 92	AK2	K	15	27	Right-handed alpha
Helix 93	AK3	K	47	60	Right-handed alpha
Helix 94	AK4	K	73	81	Right-handed alpha
Helix 95	AK5	K	95	110	Right-handed alpha
Helix 96	AK6	K	121	125	Right-handed 310
Helix 97	AK7	K	128	138	Right-handed alpha
Helix 98	AK8	K	147	149	Right-handed 310
Helix 99	AK9	K	150	155	Right-handed alpha

There are 13 sheets in PDB entry 8XRW. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	4	9	first strand
Strand 2	I	31	37	parallel
Strand 3	I	65	70	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	85	89	first strand
Strand 2	I	114	118	parallel

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There are 10 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	65	70	first strand
Strand 2	J	31	37	parallel
Strand 3	J	4	9	parallel
Strand 4	J	85	89	parallel
Strand 5	J	114	118	parallel
Strand 6	K	114	118	anti-parallel
Strand 7	K	85	89	parallel
Strand 8	K	4	9	parallel
Strand 9	K	31	37	parallel
Strand 10	K	65	70	parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	65	70	first strand
Strand 2	L	31	37	parallel
Strand 3	L	4	9	parallel
Strand 4	L	85	89	parallel
Strand 5	L	114	118	parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	4	9	first strand
Strand 2	A	31	37	parallel
Strand 3	A	65	70	parallel

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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	85	89	first strand
Strand 2	A	114	118	parallel
Strand 3	B	114	118	anti-parallel
Strand 4	B	85	89	parallel
Strand 5	B	4	9	parallel
Strand 6	B	31	37	parallel
Strand 7	B	65	70	parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	4	9	first strand
Strand 2	C	31	37	parallel
Strand 3	C	65	70	parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	85	89	first strand
Strand 2	C	114	118	parallel
Strand 3	F	114	118	anti-parallel
Strand 4	F	85	89	parallel

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There are 7 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	65	70	first strand
Strand 2	D	31	37	parallel
Strand 3	D	4	9	parallel
Strand 4	D	85	89	parallel
Strand 5	D	114	118	parallel
Strand 6	E	114	118	anti-parallel
Strand 7	E	85	89	parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	4	9	first strand
Strand 2	E	31	37	parallel
Strand 3	E	65	70	parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	4	9	first strand
Strand 2	F	31	37	parallel
Strand 3	F	65	70	parallel

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There are 7 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	65	70	first strand
Strand 2	G	31	37	parallel
Strand 3	G	4	9	parallel
Strand 4	G	85	89	parallel
Strand 5	G	114	118	parallel
Strand 6	H	114	118	anti-parallel
Strand 7	H	85	89	parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	4	9	first strand
Strand 2	H	31	37	parallel
Strand 3	H	65	70	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8XRW

Analysis of interatomic Contacts of Structural Units in PDB entry:
8XRW