Analysis of interatomic Contacts of Structural Units in PDB entry:
8XRY


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8XRY entry

There are 2 chains in PDB entry 8XRY (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1LYS 702
B
 MET 1LYS 702
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 72 helices in PDB entry 8XRY. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
2 29Right-handed alpha
Helix 2
AA2
A
30 32Right-handed 310
Helix 3
AA3
A
33 38Right-handed alpha
Helix 4
AA4
A
61 67Right-handed alpha
Helix 5
AA5
A
69 77Right-handed alpha
Helix 6
AA6
A
78 100Right-handed alpha
Helix 7
AA7
A
101 112Right-handed alpha
Helix 8
AA8
A
117 121Right-handed 310
Helix 9
AA9
A
134 139Right-handed alpha
Helix 10
AB1
A
148 184Right-handed alpha
Helix 11
AB2
A
207 218Right-handed alpha
Helix 12
AB3
A
233 254Right-handed alpha
Helix 13
AB4
A
265 269Right-handed 310
Helix 14
AB5
A
273 277Right-handed 310
Helix 15
AB6
A
279 303Right-handed alpha
Helix 16
AB7
A
317 325Right-handed alpha
Helix 17
AB8
A
355 376Right-handed alpha
Helix 18
AB9
A
377 386Right-handed alpha
Helix 19
AC1
A
387 391Right-handed 310
Helix 20
AC2
A
392 396Right-handed 310
Helix 21
AC3
A
401 409Right-handed alpha
Helix 22
AC4
A
412 439Right-handed alpha
Helix 23
AC5
A
444 469Right-handed alpha
Helix 24
AC6
A
473 484Right-handed alpha
Helix 25
AC7
A
486 498Right-handed alpha
Helix 26
AC8
A
499 501Right-handed 310
Helix 27
AC9
A
502 523Right-handed alpha
Helix 28
AD1
A
523 536Right-handed alpha
Helix 29
AD2
A
540 546Right-handed alpha
Helix 30
AD3
A
557 572Right-handed alpha
Helix 31
AD4
A
578 601Right-handed alpha
Helix 32
AD5
A
607 610Right-handed 310
Helix 33
AD6
A
611 638Right-handed alpha
Helix 34
AD7
A
642 665Right-handed alpha
Helix 35
AD8
A
665 670Right-handed alpha
Helix 36
AD9
A
686 694Right-handed alpha
Helix 37
AE1
B
2 29Right-handed alpha
Helix 38
AE2
B
30 32Right-handed 310
Helix 39
AE3
B
33 38Right-handed alpha
Helix 40
AE4
B
61 67Right-handed alpha
Helix 41
AE5
B
69 77Right-handed alpha
Helix 42
AE6
B
78 100Right-handed alpha
Helix 43
AE7
B
101 112Right-handed alpha
Helix 44
AE8
B
117 121Right-handed 310
Helix 45
AE9
B
134 139Right-handed alpha
Helix 46
AF1
B
148 184Right-handed alpha
Helix 47
AF2
B
207 218Right-handed alpha
Helix 48
AF3
B
233 254Right-handed alpha
Helix 49
AF4
B
265 269Right-handed 310
Helix 50
AF5
B
273 277Right-handed 310
Helix 51
AF6
B
279 303Right-handed alpha
Helix 52
AF7
B
317 325Right-handed alpha
Helix 53
AF8
B
355 376Right-handed alpha
Helix 54
AF9
B
377 386Right-handed alpha
Helix 55
AG1
B
387 391Right-handed 310
Helix 56
AG2
B
392 396Right-handed 310
Helix 57
AG3
B
401 409Right-handed alpha
Helix 58
AG4
B
412 439Right-handed alpha
Helix 59
AG5
B
444 469Right-handed alpha
Helix 60
AG6
B
473 484Right-handed alpha
Helix 61
AG7
B
486 498Right-handed alpha
Helix 62
AG8
B
499 501Right-handed 310
Helix 63
AG9
B
502 523Right-handed alpha
Helix 64
AH1
B
523 536Right-handed alpha
Helix 65
AH2
B
540 546Right-handed alpha
Helix 66
AH3
B
557 572Right-handed alpha
Helix 67
AH4
B
578 601Right-handed alpha
Helix 68
AH5
B
607 610Right-handed 310
Helix 69
AH6
B
611 638Right-handed alpha
Helix 70
AH7
B
642 665Right-handed alpha
Helix 71
AH8
B
665 670Right-handed alpha
Helix 72
AH9
B
686 694Right-handed alpha
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There are 2 sheets in PDB entry 8XRY. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
228 229first strand
Strand 2
A
311 314anti-parallel
Strand 3
A
193 196anti-parallel
Strand 4
A
338 340anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
228 229first strand
Strand 2
B
311 314anti-parallel
Strand 3
B
193 196anti-parallel
Strand 4
B
338 340anti-parallel
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