Analysis of interatomic Contacts of Structural Units in PDB entry:
8XS8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8XS8 entry

There are 4 chains in PDB entry 8XS8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 84VAL 464
B
 SER 33GLU 413
C
 C 1 G 21
D
 G 1 T 21
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 27 helices in PDB entry 8XS8. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
85 116Right-handed alpha
Helix 2
AA2
A
127 143Right-handed alpha
Helix 3
AA3
A
160 173Right-handed alpha
Helix 4
AA4
A
192 198Right-handed alpha
Helix 5
AA5
A
200 205Right-handed alpha
Helix 6
AA6
A
208 213Right-handed alpha
Helix 7
AA7
A
214 216Right-handed 310
Helix 8
AA8
A
217 226Right-handed alpha
Helix 9
AA9
A
326 331Right-handed 310
Helix 10
AB1
A
379 385Right-handed alpha
Helix 11
AB2
A
387 392Right-handed alpha
Helix 12
AB3
A
396 400Right-handed 310
Helix 13
AB4
A
401 418Right-handed alpha
Helix 14
AB5
B
34 53Right-handed alpha
Helix 15
AB6
B
57 63Right-handed alpha
Helix 16
AB7
B
65 87Right-handed alpha
Helix 17
AB8
B
98 102Right-handed 310
Helix 18
AB9
B
103 121Right-handed alpha
Helix 19
AC1
B
139 142Right-handed 310
Helix 20
AC2
B
148 153Right-handed alpha
Helix 21
AC3
B
156 160Right-handed 310
Helix 22
AC4
B
165 174Right-handed alpha
Helix 23
AC5
B
299 307Right-handed alpha
Helix 24
AC6
B
309 315Right-handed alpha
Helix 25
AC7
B
318 323Right-handed 310
Helix 26
AC8
B
327 342Right-handed alpha
Helix 27
AC9
B
385 395Right-handed alpha
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There are 4 sheets in PDB entry 8XS8. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
186 189first strand
Strand 2
A
175 180anti-parallel
Strand 3
A
335 343anti-parallel
Strand 4
A
303 314anti-parallel
Strand 5
A
260 268anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
423 430first strand
Strand 2
A
436 447anti-parallel
Strand 3
A
454 463anti-parallel
Strand 4
A
362 367anti-parallel
Strand 5
A
373 377anti-parallel
Strand 6
B
407 409anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
134 137first strand
Strand 2
B
124 128anti-parallel
Strand 3
B
260 268anti-parallel
Strand 4
B
232 244anti-parallel
Strand 5
B
215 223anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
295 298first strand
Strand 2
B
285 289anti-parallel
Strand 3
B
373 384anti-parallel
Strand 4
B
358 370anti-parallel
Strand 5
B
347 352anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il