Analysis of interatomic Contacts of Structural Units in PDB entry:
8XSD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8XSD entry

There are 4 chains in PDB entry 8XSD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
THR 29GLU 1148
B
THR 29GLU 1148
C
THR 29GLU 1148
H
VAL 2VAL 2
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 73 helices in PDB entry 8XSD. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
AA1
A
292 301Right-handed alpha
Helix 2
AA2
A
335 340Right-handed alpha
Helix 3
AA3
A
363 368Right-handed alpha
Helix 4
AA4
A
382 386Right-handed 310
Helix 5
AA5
A
403 405Right-handed 310
Helix 6
AA6
A
414 420Right-handed alpha
Helix 7
AA7
A
500 503Right-handed 310
Helix 8
AA8
A
735 741Right-handed alpha
Helix 9
AA9
A
744 755Right-handed alpha
Helix 10
AB1
A
756 781Right-handed alpha
Helix 11
AB2
A
814 824Right-handed alpha
Helix 12
AB3
A
848 853Right-handed 310
Helix 13
AB4
A
864 882Right-handed alpha
Helix 14
AB5
A
895 905Right-handed alpha
Helix 15
AB6
A
911 917Right-handed alpha
Helix 16
AB7
A
917 939Right-handed alpha
Helix 17
AB8
A
943 963Right-handed alpha
Helix 18
AB9
A
964 966Right-handed 310
Helix 19
AC1
A
974 982Right-handed alpha
Helix 20
AC2
A
983 986Right-handed 310
Helix 21
AC3
A
987 1028Right-handed alpha
Helix 22
AC4
A
1138 1148Right-handed alpha
Helix 23
AC5
B
292 302Right-handed alpha
Helix 24
AC6
B
335 341Right-handed alpha
Helix 25
AC7
B
363 368Right-handed alpha
Helix 26
AC8
B
403 409Right-handed 310
Helix 27
AC9
B
414 420Right-handed alpha
Helix 28
AD1
B
500 503Right-handed 310
Helix 29
AD2
B
541 544Right-handed 310
Helix 30
AD3
B
735 741Right-handed alpha
Helix 31
AD4
B
744 753Right-handed alpha
Helix 32
AD5
B
756 781Right-handed alpha
Helix 33
AD6
B
814 824Right-handed alpha
Helix 34
AD7
B
848 852Right-handed alpha
Helix 35
AD8
B
864 883Right-handed alpha
Helix 36
AD9
B
884 888Right-handed 310
Helix 37
AE1
B
895 905Right-handed alpha
Helix 38
AE2
B
911 916Right-handed alpha
Helix 39
AE3
B
917 939Right-handed alpha
Helix 40
AE4
B
943 962Right-handed alpha
Helix 41
AE5
B
963 966Right-handed 310
Helix 42
AE6
B
974 982Right-handed alpha
Helix 43
AE7
B
983 985Right-handed 310
Helix 44
AE8
B
986 1030Right-handed alpha
Helix 45
AE9
B
1114 1116Right-handed 310
Helix 46
AF1
B
1139 1148Right-handed alpha
Helix 47
AF2
C
292 302Right-handed alpha
Helix 48
AF3
C
335 341Right-handed alpha
Helix 49
AF4
C
362 369Right-handed alpha
Helix 50
AF5
C
381 386Right-handed 310
Helix 51
AF6
C
401 409Right-handed 310
Helix 52
AF7
C
414 420Right-handed alpha
Helix 53
AF8
C
735 741Right-handed alpha
Helix 54
AF9
C
744 752Right-handed alpha
Helix 55
AG1
C
753 755Right-handed 310
Helix 56
AG2
C
758 781Right-handed alpha
Helix 57
AG3
C
814 822Right-handed alpha
Helix 58
AG4
C
864 883Right-handed alpha
Helix 59
AG5
C
884 888Right-handed 310
Helix 60
AG6
C
895 905Right-handed alpha
Helix 61
AG7
C
906 908Right-handed 310
Helix 62
AG8
C
911 917Right-handed alpha
Helix 63
AG9
C
917 939Right-handed alpha
Helix 64
AH1
C
943 965Right-handed alpha
Helix 65
AH2
C
974 982Right-handed alpha
Helix 66
AH3
C
983 1030Right-handed alpha
Helix 67
AH4
C
1138 1148Right-handed alpha
Helix 68
AH5
H
86 90Right-handed 310
Helix 69
AH6
L
80 84Right-handed 310
Helix 70
AH7
G
28 32Right-handed 310
Helix 71
AH8
G
86 90Right-handed 310
Helix 72
AH9
I
86 90Right-handed 310
Helix 73
AI1
K
80 84Right-handed 310
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There are 59 sheets in PDB entry 8XSD. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7, AE8, AE9, AF1, AF2, AF3, AF4, AF5, AF6, AF7, AF8, AF9, AG1, AG2, AG3, AG4, AG5,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
48 51first strand
Strand 2
A
273 277anti-parallel
Strand 3
A
283 288anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
54 55first strand
Strand 2
A
269 270anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
222 228first strand
Strand 2
A
198 209anti-parallel
Strand 3
A
185 195anti-parallel
Strand 4
A
88 92anti-parallel
Strand 5
A
263 267anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
124 127first strand
Strand 2
A
116 119anti-parallel
Strand 3
A
101 105anti-parallel
Strand 4
A
235 239anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
309 317first strand
Strand 2
A
590 597anti-parallel
Strand 3
A
607 611anti-parallel
Strand 4
A
646 649anti-parallel
Strand 5
A
640 642anti-parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
323 324first strand
Strand 2
A
536 541parallel
Strand 3
A
544 552anti-parallel
Strand 4
A
582 586anti-parallel
Strand 5
A
573 575anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
354 356first strand
Strand 2
A
392 401anti-parallel
Strand 3
A
505 514anti-parallel
Strand 4
A
430 435anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
450 451first strand
Strand 2
A
491 492anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
471 472first strand
Strand 2
A
486 487anti-parallel
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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
652 658first strand
Strand 2
A
689 695parallel
Strand 3
A
668 673anti-parallel
Strand 4
A
662 663anti-parallel
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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
710 720first strand
Strand 2
A
1057 1075anti-parallel
Strand 3
A
1045 1054anti-parallel
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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
723 726first strand
Strand 2
A
1057 1075anti-parallel
Strand 3
A
1092 1095anti-parallel
Strand 4
A
1100 1103anti-parallel
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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
786 787first strand
Strand 2
C
700 701parallel
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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
1079 1080first strand
Strand 2
A
1085 1088anti-parallel
Strand 3
A
1118 1120anti-parallel
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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
30 31first strand
Strand 2
B
60 61anti-parallel
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There are 6 strands in AB7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
36 37first strand
Strand 2
B
220 227parallel
Strand 3
B
198 208anti-parallel
Strand 4
B
185 195anti-parallel
Strand 5
B
88 92anti-parallel
Strand 6
B
263 267anti-parallel
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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
47 51first strand
Strand 2
B
273 278anti-parallel
Strand 3
B
282 288anti-parallel
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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
54 55first strand
Strand 2
B
269 270anti-parallel
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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
124 127first strand
Strand 2
B
115 119anti-parallel
Strand 3
B
99 105anti-parallel
Strand 4
B
235 240anti-parallel
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There are 5 strands in AC2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
309 312first strand
Strand 2
B
593 597anti-parallel
Strand 3
B
607 611anti-parallel
Strand 4
B
646 649anti-parallel
Strand 5
B
640 642anti-parallel
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There are 5 strands in AC3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
322 324first strand
Strand 2
B
536 539parallel
Strand 3
B
547 552anti-parallel
Strand 4
B
582 586anti-parallel
Strand 5
B
574 575anti-parallel
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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
352 356first strand
Strand 2
B
392 401anti-parallel
Strand 3
B
505 514anti-parallel
Strand 4
B
430 435anti-parallel
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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
471 472first strand
Strand 2
B
486 487anti-parallel
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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
563 565first strand
Strand 2
C
42 44parallel
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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
652 658first strand
Strand 2
B
689 695parallel
Strand 3
B
668 673anti-parallel
Strand 4
B
662 665anti-parallel
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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
700 702first strand
Strand 2
C
786 788parallel
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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
710 711first strand
Strand 2
B
1072 1075anti-parallel
Strand 3
B
1092 1095anti-parallel
Strand 4
B
1100 1103anti-parallel
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There are 3 strands in AD1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
715 720first strand
Strand 2
B
1063 1068anti-parallel
Strand 3
B
1045 1048anti-parallel
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There are 3 strands in AD2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
723 726first strand
Strand 2
B
1057 1060anti-parallel
Strand 3
B
1051 1054anti-parallel
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There are 4 strands in AD3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
1118 1123first strand
Strand 2
B
1084 1088anti-parallel
Strand 3
B
1079 1080anti-parallel
Strand 4
B
1131 1132parallel
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There are 2 strands in AD4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
30 31first strand
Strand 2
C
60 61anti-parallel
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There are 3 strands in AD5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
48 51first strand
Strand 2
C
273 277anti-parallel
Strand 3
C
283 288anti-parallel
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There are 2 strands in AD6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
54 55first strand
Strand 2
C
269 270anti-parallel
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There are 5 strands in AD7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
222 227first strand
Strand 2
C
198 207anti-parallel
Strand 3
C
186 195anti-parallel
Strand 4
C
88 94anti-parallel
Strand 5
C
263 267anti-parallel
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There are 4 strands in AD8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
124 127first strand
Strand 2
C
115 119anti-parallel
Strand 3
C
101 104anti-parallel
Strand 4
C
236 239anti-parallel
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There are 5 strands in AD9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
309 317first strand
Strand 2
C
590 597anti-parallel
Strand 3
C
607 610anti-parallel
Strand 4
C
647 649anti-parallel
Strand 5
C
640 642anti-parallel
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There are 6 strands in AE1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
322 324first strand
Strand 2
C
536 541parallel
Strand 3
C
544 552anti-parallel
Strand 4
C
582 586anti-parallel
Strand 5
C
571 575anti-parallel
Strand 6
C
563 565anti-parallel
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There are 4 strands in AE2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
354 356first strand
Strand 2
C
393 400anti-parallel
Strand 3
C
506 512anti-parallel
Strand 4
C
430 435anti-parallel
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There are 2 strands in AE3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
450 451first strand
Strand 2
C
491 492anti-parallel
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There are 2 strands in AE4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
471 472first strand
Strand 2
C
486 487anti-parallel
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There are 4 strands in AE5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
652 658first strand
Strand 2
C
689 695parallel
Strand 3
C
668 673anti-parallel
Strand 4
C
662 663anti-parallel
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There are 5 strands in AE6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
710 711first strand
Strand 2
C
1072 1075anti-parallel
Strand 3
C
1092 1095anti-parallel
Strand 4
C
1100 1103anti-parallel
Strand 5
C
1111 1112anti-parallel
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There are 3 strands in AE7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
715 720first strand
Strand 2
C
1063 1068anti-parallel
Strand 3
C
1045 1048anti-parallel
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There are 2 strands in AE8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
733 734first strand
Strand 2
C
856 857anti-parallel
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There are 2 strands in AE9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
1051 1054first strand
Strand 2
C
1057 1060anti-parallel
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There are 4 strands in AF1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
1118 1123first strand
Strand 2
C
1084 1088anti-parallel
Strand 3
C
1079 1080anti-parallel
Strand 4
C
1131 1132parallel
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There are 4 strands in AF2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
H
3 7first strand
Strand 2
H
17 25anti-parallel
Strand 3
H
77 83anti-parallel
Strand 4
H
67 71anti-parallel
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There are 4 strands in AF3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
H
57 58first strand
Strand 2
H
45 51anti-parallel
Strand 3
H
34 39anti-parallel
Strand 4
H
92 96anti-parallel
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There are 4 strands in AF4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
L
5 7first strand
Strand 2
L
19 24anti-parallel
Strand 3
L
71 76anti-parallel
Strand 4
L
63 68anti-parallel
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There are 5 strands in AF5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
L
54 55first strand
Strand 2
L
46 50anti-parallel
Strand 3
L
34 39anti-parallel
Strand 4
L
86 92anti-parallel
Strand 5
L
97 98anti-parallel
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There are 4 strands in AF6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
G
3 7first strand
Strand 2
G
18 25anti-parallel
Strand 3
G
77 82anti-parallel
Strand 4
G
67 71anti-parallel
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There are 4 strands in AF7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
G
57 59first strand
Strand 2
G
46 51anti-parallel
Strand 3
G
34 39anti-parallel
Strand 4
G
92 96anti-parallel
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There are 4 strands in AF8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
J
5 6first strand
Strand 2
J
19 24anti-parallel
Strand 3
J
71 76anti-parallel
Strand 4
J
63 68anti-parallel
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There are 4 strands in AF9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
J
54 55first strand
Strand 2
J
46 50anti-parallel
Strand 3
J
34 39anti-parallel
Strand 4
J
86 91anti-parallel
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There are 4 strands in AG1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
I
4 7first strand
Strand 2
I
18 24anti-parallel
Strand 3
I
77 82anti-parallel
Strand 4
I
67 71anti-parallel
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There are 4 strands in AG2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
I
57 58first strand
Strand 2
I
46 51anti-parallel
Strand 3
I
34 39anti-parallel
Strand 4
I
92 96anti-parallel
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There are 4 strands in AG3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
K
5 6first strand
Strand 2
K
19 24anti-parallel
Strand 3
K
71 76anti-parallel
Strand 4
K
63 68anti-parallel
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There are 4 strands in AG4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
K
46 47first strand
Strand 2
K
35 39anti-parallel
Strand 3
K
86 92anti-parallel
Strand 4
K
97 98anti-parallel
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There are 2 strands in AG5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
K
49 50first strand
Strand 2
K
54 55anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il